Click here to switch to the map view.

The map label for this gene is ymfO [C]

Identifier: 167039897

GI number: 167039897

Start: 1292868

End: 1294130

Strand: Direct

Name: ymfO [C]

Synonym: Teth514_1252

Alternate gene names: 167039897

Gene position: 1292868-1294130 (Clockwise)

Preceding gene: 167039896

Following gene: 167039898

Centisome position: 52.61

GC content: 42.44

Gene sequence:

>1263_bases
ATGCAGATGGGATTGTTTTCTAATATTTTCAAAGCGCGTGATAAACCGAAGGATCGAACCACAGGAAGCAATTATAGCTT
CTTTTTTGGTGGAACAACCAGCGGTAAGCCTGTAAACGAACATACAGCAATGCAAATGACAGCGGTCTATTCATGCGTAA
GAATACTTGCAGAGGCTGTGGCAGGGCTACCCCTACACCTATATAAATACACTGCAAGCGGCAGTAAGGAAAAGGCTCTT
TCTCATCCACTGTATTTTTTATTACATGATGAGCCGAATCCAGAGATGAGTTCTTTCGTTTTCCGAGAAACGTTAATGAC
TCATCTTTTATTATGGGGCAATGCCTATGCACAGATTATTCGAAATGGAAAAGGTGAAGTCATAGCACTGTATCCGTTAA
TGCCAAATCGAATGTCGGTGGACCGCGATTACAGTGGTGCTCTTTATTATACCTATACCAGATATTCCGATGAAGCACCT
ACGATGAAAGGTATGACAGTCACACTTAGACCAAGTGATGTATTTCATATACCTGGCTTAGGCTTTGATGGACTAGTGGG
CTATTCGCCGATTGCAATGGCTAAGAATGCTATAGGTATGGCAATTGCTTGTGAGGAATATGGAGCTAAATTCTTTGCTA
ACGGAGCTGCTCCAGGAGGGGTACTTGAGCATCCAGGTACCATTAAAGACCCTCAAAAAGTACGGGATAGTTGGAATGCA
GCCTATCAGGGAAGCAGTAACTCTCATCGTGTAGCGGTGCTTGAAGAAGGAATGAAGTATCAGCCTATTGGTATCTCACC
AGAACAAGCTCAGTTCTTAGAAACAAGAAAATTTCAGATTAATGAAATCGCTCGAATTTTCCGCGTACCTCCACATATGG
TAGGAGACTTGGAAAAATCGAGCTTTTCTAATATTGAGCAACAGTCACTGGAGTTTGTGAAATACACATTAGATCCTTGG
GTGATTCGTTGGGAGCAGACCATCAGCCGAGCACTTTTAAGGCCAGATGAAAAGAAACTTTATTTTGCCAAGTTCAATGT
AGATGGACTGCTTCGAGGTGATTATGTTTCTCGAATGAATGGGTATGCAACCGCGAGACAGAACGGCTGGATGAGTGCCA
ATGATATTAGGGAGCTTGAGAACCTTGATCGAATCCCACCAGAGCTTGGAGGAGATTTATATCTAATCAATGGCAATATG
ACCAAACTTGAAGATGCGGGTATTTTCGCAAATAAAGAAGGATTGGAGGGAAAACCTGAATGA

Upstream 100 bases:

>100_bases
CGCTACCATTATGGCTCTTGACCGAGCAATTCGCAAAGGTGGAACAGGTAACTCCGTTTATGACGGTCGAGGGCTTCTTA
TTTTGTAGCAAAGGAGAGTG

Downstream 100 bases:

>100_bases
AGAAATTTTGGAATTGGGTTCGCGACACAGATACACAGACACGAACCCTCTATCTAAACGGTGCAATTGCCGAGGAGAGT
TGGTTTGAGGATGATGTTAC

Product: HK97 family phage portal protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MQMGLFSNIFKARDKPKDRTTGSNYSFFFGGTTSGKPVNEHTAMQMTAVYSCVRILAEAVAGLPLHLYKYTASGSKEKAL
SHPLYFLLHDEPNPEMSSFVFRETLMTHLLLWGNAYAQIIRNGKGEVIALYPLMPNRMSVDRDYSGALYYTYTRYSDEAP
TMKGMTVTLRPSDVFHIPGLGFDGLVGYSPIAMAKNAIGMAIACEEYGAKFFANGAAPGGVLEHPGTIKDPQKVRDSWNA
AYQGSSNSHRVAVLEEGMKYQPIGISPEQAQFLETRKFQINEIARIFRVPPHMVGDLEKSSFSNIEQQSLEFVKYTLDPW
VIRWEQTISRALLRPDEKKLYFAKFNVDGLLRGDYVSRMNGYATARQNGWMSANDIRELENLDRIPPELGGDLYLINGNM
TKLEDAGIFANKEGLEGKPE

Sequences:

>Translated_420_residues
MQMGLFSNIFKARDKPKDRTTGSNYSFFFGGTTSGKPVNEHTAMQMTAVYSCVRILAEAVAGLPLHLYKYTASGSKEKAL
SHPLYFLLHDEPNPEMSSFVFRETLMTHLLLWGNAYAQIIRNGKGEVIALYPLMPNRMSVDRDYSGALYYTYTRYSDEAP
TMKGMTVTLRPSDVFHIPGLGFDGLVGYSPIAMAKNAIGMAIACEEYGAKFFANGAAPGGVLEHPGTIKDPQKVRDSWNA
AYQGSSNSHRVAVLEEGMKYQPIGISPEQAQFLETRKFQINEIARIFRVPPHMVGDLEKSSFSNIEQQSLEFVKYTLDPW
VIRWEQTISRALLRPDEKKLYFAKFNVDGLLRGDYVSRMNGYATARQNGWMSANDIRELENLDRIPPELGGDLYLINGNM
TKLEDAGIFANKEGLEGKPE
>Mature_420_residues
MQMGLFSNIFKARDKPKDRTTGSNYSFFFGGTTSGKPVNEHTAMQMTAVYSCVRILAEAVAGLPLHLYKYTASGSKEKAL
SHPLYFLLHDEPNPEMSSFVFRETLMTHLLLWGNAYAQIIRNGKGEVIALYPLMPNRMSVDRDYSGALYYTYTRYSDEAP
TMKGMTVTLRPSDVFHIPGLGFDGLVGYSPIAMAKNAIGMAIACEEYGAKFFANGAAPGGVLEHPGTIKDPQKVRDSWNA
AYQGSSNSHRVAVLEEGMKYQPIGISPEQAQFLETRKFQINEIARIFRVPPHMVGDLEKSSFSNIEQQSLEFVKYTLDPW
VIRWEQTISRALLRPDEKKLYFAKFNVDGLLRGDYVSRMNGYATARQNGWMSANDIRELENLDRIPPELGGDLYLINGNM
TKLEDAGIFANKEGLEGKPE

Specific function: Unknown

COG id: COG4695

COG function: function code S; Phage-related protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. HK97 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR006427 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 47072; Mature: 47072

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQMGLFSNIFKARDKPKDRTTGSNYSFFFGGTTSGKPVNEHTAMQMTAVYSCVRILAEAV
CCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AGLPLHLYKYTASGSKEKALSHPLYFLLHDEPNPEMSSFVFRETLMTHLLLWGNAYAQII
CCCCEEEEEEECCCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RNGKGEVIALYPLMPNRMSVDRDYSGALYYTYTRYSDEAPTMKGMTVTLRPSDVFHIPGL
HCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCEEECCCC
GFDGLVGYSPIAMAKNAIGMAIACEEYGAKFFANGAAPGGVLEHPGTIKDPQKVRDSWNA
CCCCCCCCCHHHHHHCCCCEEEEEHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCC
AYQGSSNSHRVAVLEEGMKYQPIGISPEQAQFLETRKFQINEIARIFRVPPHMVGDLEKS
EECCCCCCCEEEEEECCCEECCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCHHHCCCCHH
SFSNIEQQSLEFVKYTLDPWVIRWEQTISRALLRPDEKKLYFAKFNVDGLLRGDYVSRMN
HHHHHHHHHHHHHHEECCCEEEEHHHHHHHHHCCCCCCEEEEEEECCCCEECCHHHHHHC
GYATARQNGWMSANDIRELENLDRIPPELGGDLYLINGNMTKLEDAGIFANKEGLEGKPE
CCEEECCCCCCCHHHHHHHHHHHCCCHHHCCCEEEECCCCEEEECCCCEECCCCCCCCCC
>Mature Secondary Structure
MQMGLFSNIFKARDKPKDRTTGSNYSFFFGGTTSGKPVNEHTAMQMTAVYSCVRILAEAV
CCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AGLPLHLYKYTASGSKEKALSHPLYFLLHDEPNPEMSSFVFRETLMTHLLLWGNAYAQII
CCCCEEEEEEECCCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RNGKGEVIALYPLMPNRMSVDRDYSGALYYTYTRYSDEAPTMKGMTVTLRPSDVFHIPGL
HCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCEEECCCC
GFDGLVGYSPIAMAKNAIGMAIACEEYGAKFFANGAAPGGVLEHPGTIKDPQKVRDSWNA
CCCCCCCCCHHHHHHCCCCEEEEEHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCC
AYQGSSNSHRVAVLEEGMKYQPIGISPEQAQFLETRKFQINEIARIFRVPPHMVGDLEKS
EECCCCCCCEEEEEECCCEECCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCHHHCCCCHH
SFSNIEQQSLEFVKYTLDPWVIRWEQTISRALLRPDEKKLYFAKFNVDGLLRGDYVSRMN
HHHHHHHHHHHHHHEECCCEEEEHHHHHHHHHCCCCCCEEEEEEECCCCEECCHHHHHHC
GYATARQNGWMSANDIRELENLDRIPPELGGDLYLINGNMTKLEDAGIFANKEGLEGKPE
CCEEECCCCCCCHHHHHHHHHHHCCCHHHCCCEEEECCCCEEEECCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA