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The map label for this gene is opuCB [H]

Identifier: 167039847

GI number: 167039847

Start: 1241351

End: 1241989

Strand: Direct

Name: opuCB [H]

Synonym: Teth514_1202

Alternate gene names: 167039847

Gene position: 1241351-1241989 (Clockwise)

Preceding gene: 167039846

Following gene: 167039848

Centisome position: 50.52

GC content: 35.52

Gene sequence:

>639_bases
GTGTTGGCAGAATATATAAATTTTATAAAAGATAGAGCTGACGATATTTTAATTTTAACAACTCAGCATATTCAATTATC
TGTTATGGCTCTGATTATAGCTATAGCTATAGGAGTACCATTAGGTATCTTGATTGCAAAATTTCCTTCAACTTCTTCAT
TTGTCATTGGATTAGCCAATGCTGTACAAGCAATTCCAAGTTTAGCTTTGTTGGGATTTTTAGTGCCTTTTTTAGGTATA
GGTTCAACTCCTTCAATAGTTATGATAGTTATGTATACACTACTACCAATTATAAAAAATACCTATACCGGTCTTGTCAA
TATAGATAAAGCTATTCTCGAAGCGGGTAAAGGTATGGGAATGACGGAGATACAATTAATGAGGATGGTGCAACTGCCAT
TGGCTTTACCTGTTATAATGGCAGGTATTCGAATAGCAGCTGTGACAGCCGTTGGTTTTACTACTTTGGCGGCGTTGATT
GGAGCCGGTGGTTTAGGTCAATTGATTTACAGGGGGATATCGATGGTGAATAACCAGATGATACTAGCAGGTGCAATACC
AGCAATGATTTTGGCACTATTGATAGACTATATTTTACTTTTAGTAGAAAAGATAGTAACTCCAAAGGGAATAAAATAA

Upstream 100 bases:

>100_bases
GTGAATGAAAATAATTTGCTCCAAGGCTTGATCACGCGAAGTGCCCTGGTAAATTATTTAGGTGCAAATTATGCAGAATA
GGAAGGAGGACTTTTAAATA

Downstream 100 bases:

>100_bases
AAAAAGGAGGAGATTTTAAATGAAAAGAATTTTGCTATTAAGTTTGGTTTTTATTTTAGCTGTTACTTTCATGGCATCTT
GCGGTATTGGCAGTTCTCAA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MLAEYINFIKDRADDILILTTQHIQLSVMALIIAIAIGVPLGILIAKFPSTSSFVIGLANAVQAIPSLALLGFLVPFLGI
GSTPSIVMIVMYTLLPIIKNTYTGLVNIDKAILEAGKGMGMTEIQLMRMVQLPLALPVIMAGIRIAAVTAVGFTTLAALI
GAGGLGQLIYRGISMVNNQMILAGAIPAMILALLIDYILLLVEKIVTPKGIK

Sequences:

>Translated_212_residues
MLAEYINFIKDRADDILILTTQHIQLSVMALIIAIAIGVPLGILIAKFPSTSSFVIGLANAVQAIPSLALLGFLVPFLGI
GSTPSIVMIVMYTLLPIIKNTYTGLVNIDKAILEAGKGMGMTEIQLMRMVQLPLALPVIMAGIRIAAVTAVGFTTLAALI
GAGGLGQLIYRGISMVNNQMILAGAIPAMILALLIDYILLLVEKIVTPKGIK
>Mature_212_residues
MLAEYINFIKDRADDILILTTQHIQLSVMALIIAIAIGVPLGILIAKFPSTSSFVIGLANAVQAIPSLALLGFLVPFLGI
GSTPSIVMIVMYTLLPIIKNTYTGLVNIDKAILEAGKGMGMTEIQLMRMVQLPLALPVIMAGIRIAAVTAVGFTTLAALI
GAGGLGQLIYRGISMVNNQMILAGAIPAMILALLIDYILLLVEKIVTPKGIK

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=212, Percent_Identity=37.7358490566038, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1788449, Length=198, Percent_Identity=33.8383838383838, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789033, Length=179, Percent_Identity=32.9608938547486, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786564, Length=194, Percent_Identity=29.3814432989691, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87081802, Length=85, Percent_Identity=37.6470588235294, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 22379; Mature: 22379

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAEYINFIKDRADDILILTTQHIQLSVMALIIAIAIGVPLGILIAKFPSTSSFVIGLAN
CHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
AVQAIPSLALLGFLVPFLGIGSTPSIVMIVMYTLLPIIKNTYTGLVNIDKAILEAGKGMG
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
MTEIQLMRMVQLPLALPVIMAGIRIAAVTAVGFTTLAALIGAGGLGQLIYRGISMVNNQM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
ILAGAIPAMILALLIDYILLLVEKIVTPKGIK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLAEYINFIKDRADDILILTTQHIQLSVMALIIAIAIGVPLGILIAKFPSTSSFVIGLAN
CHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
AVQAIPSLALLGFLVPFLGIGSTPSIVMIVMYTLLPIIKNTYTGLVNIDKAILEAGKGMG
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
MTEIQLMRMVQLPLALPVIMAGIRIAAVTAVGFTTLAALIGAGGLGQLIYRGISMVNNQM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
ILAGAIPAMILALLIDYILLLVEKIVTPKGIK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]