| Definition | Thermoanaerobacter sp. X514 chromosome, complete genome. |
|---|---|
| Accession | NC_010320 |
| Length | 2,457,259 |
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The map label for this gene is yrrC [H]
Identifier: 167039107
GI number: 167039107
Start: 460813
End: 463020
Strand: Direct
Name: yrrC [H]
Synonym: Teth514_0446
Alternate gene names: 167039107
Gene position: 460813-463020 (Clockwise)
Preceding gene: 167039106
Following gene: 167039108
Centisome position: 18.75
GC content: 33.83
Gene sequence:
>2208_bases ATGATTGACATAGAGGGTGTAGTTGAAGAAATAATTTTTAGAAATGAACAAAATGGTTATACGGTTTTAGAATTAAGTAC CCAAGGTTTAGTAGTCACTGCTGTAGGTTATATGCCTTATGTAAACATTGGGGAAAGAATTAAAATTGAAGGAGAATGGG TAGAACATCCTGATTATGGTGAGCAAATTAGGGTTTTAAATTATGAAACCTTGGCTCCCACCACTTTAGAAGGAATAGAA AAGTTTTTATCTTCTGGCTTAATTCCTGGAATAGGTCCTGTTACAGCAAGAAAAATTGTAAAAAAGTTTGGCGTTGATTC TTTAAATATAATTGAAACTGCACCAGAAAGATTAAAAGAAATAAAAGGTCTAAGCGATGAGAAGATAAAAAGAATTTGTG AAGCTTATGAAATGCAAAAGGGCATAAAAGAAGTGATGGTGTTTTTGCAGGGGTACGGTATTTCCACTGCAATGGCTATA AAGATTTATAAAGAATACGGAAACAACGCGATTGAAATTATTAAGCAAAACCCTTACAGATTGGCTGACGATATATTTGG AATAGGATTTAAAACTGCAGACAAAATAGCAGAGAGCCTAGGAGTTGACCCTCATTCTCTATATCGCATATCTTCTGGTA CTCGATATGTTTTGATGCAGTATGCGGCAAATGGTCACACCTATGTGCCGAAAGAATTGTTAAAAAAAGAAGCAGCAAGT TTGTTAGAAGTGAGCGAAGAAGAAGTAGAGGATTCTTTTGTGCTTTTAGTACAAAATGAAAAAATACATATTGAAACTTT TGAAGATGATACTGTAGGAATTTACTATATACCTTACTATATAGCTGAATTACACACAGCAGAGAGATTGTTTAACATGA CACTAATGGAAAATGAAGATTTAGGCATAGATGTCCAAAAAGAAATTAGAAATTTTGAAAAAGAAACAGGTATTTTGTTA GCAGAAAATCAAAAATTGGCTGTTGAAGAAGCTGTTAAAAATTCTGTTGTTGTCATAACGGGAGGACCAGGCACAGGAAA GACTACAATAATAAATTGTATAATACGTATTTTTGAAAAAGCTGGTAAAAAAGTGGCTCTTGCAGCCCCAACAGGAAGAG CCGCAAAAAGGATAACGGAAGCTACTGGAAAAGAGGCGAAGACTATTCATAGGCTTTTAGAATATACTTATTCGGAGGAA GAAGGGAAGGGCTTTAACAAAAATGAAAAAGACCCATTAAAATACGACGTTATAATAGTTGACGAAGCTTCAATGGTAGA TATATTGCTTATGAATGCTTTATTAAAAGCCCTACCTATAGGGGCAAAACTGATTTTAGTAGGGGATGCTGATCAGCTTC CATCTGTTGGAGCCGGAAATGTCCTAAGAGATATAATAGACAGTGGAATAGTAAAAGTGATACGTTTAAAAGAAATTTTT AGACAGCAAAAGCAAAGTTTGATAGTAGTAAATGCTCACAAGATAAATAATGGAGAATATCCAACCTATAACGATAAAAA TAGTGATTTCTTTTTTATAAATGCTAACACCCAAGAGGATATATTAAAAACCATATTGGAGCTTGTGACAAACAGACTTC CTAAAGCTTATGGATTTCATCCTATTAATGATATTCAAGTACTCACCCCTATGAGAAAAGGGATAATTGGTGTTCACAAT TTAAATTTAGAGCTGCAAAAAGCATTAAATCCCCACGACAAAACTAAAGCCGAAAAAATAATGAAGGAGTTTGTCTTCAG GGTGGGGGATAAAGTGATGCAAATAAAAAATAACTACAAGATAAAATGGAAAAAAGGCGATGAAGAAGGAGAAGGAGTGT TTAACGGAGATATAGGAATAATTCAATCAATAGACGAAGAATTACAGGAATTGACTGTATATTTTGACGACGAAAAATTT GTCACTTATGACTTTTCTGACTTGAATGAACTAAATTTGTCTTATGCTATAACAGTACACAAAAGCCAAGGCAGTGAATT TCCTGTTGTCATAATGCCAATTACTTATGGACCCCCTATGCTATTAACAAGAAACCTTTTGTACACTGCCGTTACAAGGG CGAAGAAATTGGTTATTTTGGTAGGTCAAGAGAAATATTTGAAATTTATGATTGACAACAATAGAATCTCAAAAAGATAT TCAGGGCTTCTTTCAAGGCTTAAAAAAGCACTTTTGTATGTAAACTAA
Upstream 100 bases:
>100_bases ATACCACAAAAATTGAAAAAAAGAAATGAATTGGCTTTAATTTGCTTTAAATATAAGGTAAAATTAAATAAAGAAAAGAA TTAAAACAGGAGAATCGGCT
Downstream 100 bases:
>100_bases ATATTACGATTTTACACAAAATAGAGGAAAATTTACTGTAAAATGATAATTTTTTAATTAATTTTAATTTAATAATGCCG ATATAAAATATAAAAGAAAA
Product: RecD/TraA family helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 735; Mature: 735
Protein sequence:
>735_residues MIDIEGVVEEIIFRNEQNGYTVLELSTQGLVVTAVGYMPYVNIGERIKIEGEWVEHPDYGEQIRVLNYETLAPTTLEGIE KFLSSGLIPGIGPVTARKIVKKFGVDSLNIIETAPERLKEIKGLSDEKIKRICEAYEMQKGIKEVMVFLQGYGISTAMAI KIYKEYGNNAIEIIKQNPYRLADDIFGIGFKTADKIAESLGVDPHSLYRISSGTRYVLMQYAANGHTYVPKELLKKEAAS LLEVSEEEVEDSFVLLVQNEKIHIETFEDDTVGIYYIPYYIAELHTAERLFNMTLMENEDLGIDVQKEIRNFEKETGILL AENQKLAVEEAVKNSVVVITGGPGTGKTTIINCIIRIFEKAGKKVALAAPTGRAAKRITEATGKEAKTIHRLLEYTYSEE EGKGFNKNEKDPLKYDVIIVDEASMVDILLMNALLKALPIGAKLILVGDADQLPSVGAGNVLRDIIDSGIVKVIRLKEIF RQQKQSLIVVNAHKINNGEYPTYNDKNSDFFFINANTQEDILKTILELVTNRLPKAYGFHPINDIQVLTPMRKGIIGVHN LNLELQKALNPHDKTKAEKIMKEFVFRVGDKVMQIKNNYKIKWKKGDEEGEGVFNGDIGIIQSIDEELQELTVYFDDEKF VTYDFSDLNELNLSYAITVHKSQGSEFPVVIMPITYGPPMLLTRNLLYTAVTRAKKLVILVGQEKYLKFMIDNNRISKRY SGLLSRLKKALLYVN
Sequences:
>Translated_735_residues MIDIEGVVEEIIFRNEQNGYTVLELSTQGLVVTAVGYMPYVNIGERIKIEGEWVEHPDYGEQIRVLNYETLAPTTLEGIE KFLSSGLIPGIGPVTARKIVKKFGVDSLNIIETAPERLKEIKGLSDEKIKRICEAYEMQKGIKEVMVFLQGYGISTAMAI KIYKEYGNNAIEIIKQNPYRLADDIFGIGFKTADKIAESLGVDPHSLYRISSGTRYVLMQYAANGHTYVPKELLKKEAAS LLEVSEEEVEDSFVLLVQNEKIHIETFEDDTVGIYYIPYYIAELHTAERLFNMTLMENEDLGIDVQKEIRNFEKETGILL AENQKLAVEEAVKNSVVVITGGPGTGKTTIINCIIRIFEKAGKKVALAAPTGRAAKRITEATGKEAKTIHRLLEYTYSEE EGKGFNKNEKDPLKYDVIIVDEASMVDILLMNALLKALPIGAKLILVGDADQLPSVGAGNVLRDIIDSGIVKVIRLKEIF RQQKQSLIVVNAHKINNGEYPTYNDKNSDFFFINANTQEDILKTILELVTNRLPKAYGFHPINDIQVLTPMRKGIIGVHN LNLELQKALNPHDKTKAEKIMKEFVFRVGDKVMQIKNNYKIKWKKGDEEGEGVFNGDIGIIQSIDEELQELTVYFDDEKF VTYDFSDLNELNLSYAITVHKSQGSEFPVVIMPITYGPPMLLTRNLLYTAVTRAKKLVILVGQEKYLKFMIDNNRISKRY SGLLSRLKKALLYVN >Mature_735_residues MIDIEGVVEEIIFRNEQNGYTVLELSTQGLVVTAVGYMPYVNIGERIKIEGEWVEHPDYGEQIRVLNYETLAPTTLEGIE KFLSSGLIPGIGPVTARKIVKKFGVDSLNIIETAPERLKEIKGLSDEKIKRICEAYEMQKGIKEVMVFLQGYGISTAMAI KIYKEYGNNAIEIIKQNPYRLADDIFGIGFKTADKIAESLGVDPHSLYRISSGTRYVLMQYAANGHTYVPKELLKKEAAS LLEVSEEEVEDSFVLLVQNEKIHIETFEDDTVGIYYIPYYIAELHTAERLFNMTLMENEDLGIDVQKEIRNFEKETGILL AENQKLAVEEAVKNSVVVITGGPGTGKTTIINCIIRIFEKAGKKVALAAPTGRAAKRITEATGKEAKTIHRLLEYTYSEE EGKGFNKNEKDPLKYDVIIVDEASMVDILLMNALLKALPIGAKLILVGDADQLPSVGAGNVLRDIIDSGIVKVIRLKEIF RQQKQSLIVVNAHKINNGEYPTYNDKNSDFFFINANTQEDILKTILELVTNRLPKAYGFHPINDIQVLTPMRKGIIGVHN LNLELQKALNPHDKTKAEKIMKEFVFRVGDKVMQIKNNYKIKWKKGDEEGEGVFNGDIGIIQSIDEELQELTVYFDDEKF VTYDFSDLNELNLSYAITVHKSQGSEFPVVIMPITYGPPMLLTRNLLYTAVTRAKKLVILVGQEKYLKFMIDNNRISKRY SGLLSRLKKALLYVN
Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789182, Length=470, Percent_Identity=30.4255319148936, Blast_Score=142, Evalue=9e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR006345 [H]
Pfam domain/function: NA
EC number: 3.1.11.5
Molecular weight: Translated: 82862; Mature: 82862
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDIEGVVEEIIFRNEQNGYTVLELSTQGLVVTAVGYMPYVNIGERIKIEGEWVEHPDYG CCCHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCEEEEECEEECCCCCC EQIRVLNYETLAPTTLEGIEKFLSSGLIPGIGPVTARKIVKKFGVDSLNIIETAPERLKE CEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH IKGLSDEKIKRICEAYEMQKGIKEVMVFLQGYGISTAMAIKIYKEYGNNAIEIIKQNPYR HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCH LADDIFGIGFKTADKIAESLGVDPHSLYRISSGTRYVLMQYAANGHTYVPKELLKKEAAS HHHHHHCCCCHHHHHHHHHHCCCHHHEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHH LLEVSEEEVEDSFVLLVQNEKIHIETFEDDTVGIYYIPYYIAELHTAERLFNMTLMENED HHHHCHHHCCCCEEEEEECCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHEECCCC LGIDVQKEIRNFEKETGILLAENQKLAVEEAVKNSVVVITGGPGTGKTTIINCIIRIFEK CCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHH AGKKVALAAPTGRAAKRITEATGKEAKTIHRLLEYTYSEEEGKGFNKNEKDPLKYDVIIV CCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE DEASMVDILLMNALLKALPIGAKLILVGDADQLPSVGAGNVLRDIIDSGIVKVIRLKEIF CCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH RQQKQSLIVVNAHKINNGEYPTYNDKNSDFFFINANTQEDILKTILELVTNRLPKAYGFH HHHCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCC PINDIQVLTPMRKGIIGVHNLNLELQKALNPHDKTKAEKIMKEFVFRVGDKVMQIKNNYK CCCCHHEECHHHHCEEEEEECCEEHHHHCCCCCHHHHHHHHHHHHHHHCHHHEEECCCCE IKWKKGDEEGEGVFNGDIGIIQSIDEELQELTVYFDDEKFVTYDFSDLNELNLSYAITVH EEEECCCCCCCCEECCCHHHHHHHHHHHHHEEEEECCCEEEEEECCCCCCCCEEEEEEEE KSQGSEFPVVIMPITYGPPMLLTRNLLYTAVTRAKKLVILVGQEKYLKFMIDNNRISKRY CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEECCCHHHHHH SGLLSRLKKALLYVN HHHHHHHHHHHEECC >Mature Secondary Structure MIDIEGVVEEIIFRNEQNGYTVLELSTQGLVVTAVGYMPYVNIGERIKIEGEWVEHPDYG CCCHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCEEEEECEEECCCCCC EQIRVLNYETLAPTTLEGIEKFLSSGLIPGIGPVTARKIVKKFGVDSLNIIETAPERLKE CEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH IKGLSDEKIKRICEAYEMQKGIKEVMVFLQGYGISTAMAIKIYKEYGNNAIEIIKQNPYR HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCH LADDIFGIGFKTADKIAESLGVDPHSLYRISSGTRYVLMQYAANGHTYVPKELLKKEAAS HHHHHHCCCCHHHHHHHHHHCCCHHHEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHH LLEVSEEEVEDSFVLLVQNEKIHIETFEDDTVGIYYIPYYIAELHTAERLFNMTLMENED HHHHCHHHCCCCEEEEEECCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHEECCCC LGIDVQKEIRNFEKETGILLAENQKLAVEEAVKNSVVVITGGPGTGKTTIINCIIRIFEK CCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHH AGKKVALAAPTGRAAKRITEATGKEAKTIHRLLEYTYSEEEGKGFNKNEKDPLKYDVIIV CCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE DEASMVDILLMNALLKALPIGAKLILVGDADQLPSVGAGNVLRDIIDSGIVKVIRLKEIF CCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH RQQKQSLIVVNAHKINNGEYPTYNDKNSDFFFINANTQEDILKTILELVTNRLPKAYGFH HHHCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCC PINDIQVLTPMRKGIIGVHNLNLELQKALNPHDKTKAEKIMKEFVFRVGDKVMQIKNNYK CCCCHHEECHHHHCEEEEEECCEEHHHHCCCCCHHHHHHHHHHHHHHHCHHHEEECCCCE IKWKKGDEEGEGVFNGDIGIIQSIDEELQELTVYFDDEKFVTYDFSDLNELNLSYAITVH EEEECCCCCCCCEECCCHHHHHHHHHHHHHEEEEECCCEEEEEECCCCCCCCEEEEEEEE KSQGSEFPVVIMPITYGPPMLLTRNLLYTAVTRAKKLVILVGQEKYLKFMIDNNRISKRY CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEECCCHHHHHH SGLLSRLKKALLYVN HHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]