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The map label for this gene is ysdC [H]

Identifier: 167039040

GI number: 167039040

Start: 384831

End: 385853

Strand: Direct

Name: ysdC [H]

Synonym: Teth514_0377

Alternate gene names: 167039040

Gene position: 384831-385853 (Clockwise)

Preceding gene: 167039039

Following gene: 167039041

Centisome position: 15.66

GC content: 36.36

Gene sequence:

>1023_bases
ATGTTATTAAAGGAATTGACAGAAATAATGGGGGCTTCAGGAGATGAGAAGGAGATAAGGGAGAAGATAAAAAGTATTGT
TGAACCATATGTGGACAATGTTTATGTAGATAAAATAGGGAATTTGATAGCCTGCAAAAAAGGCAAAAAAGACAAACCTA
AAATAATGTTAGCTGCCCATATGGATGAAGTAGGACTTATGGTAAAATCAGTTAATGAAGATGGGACTTTGAGTTTTTTT
CCTGTAGGTGGTGTAGATAATAGAATACTCGTTGCAAAAACAGTAAAAGTAGGTGAAAAGGGAATAAATGGAGTAATAGG
AGCAAAGCCAATACACCTTCAAAAGAGAGACGAACAGCAAAAGCCTCTTGACTTCGATTCTCTTTATATAGACATTGGTG
CGACTTCAAAAGAAGAAGCTTTAAAACATGTTTCCCCTGGAGATTATGTTTATTTTGACTCAAATTTTGAGATATTAGGA
AATGGCTATGTGAAAGCGAAGGCTTTGGATGACAGAATAGGCTGTAATGTGCTGATAGAAAATCTGAAAAACGAGTATGA
ATATACTGTTTGTGCAGCTTTTACAGTGGAGGAGGAAGTAGGTTTAAGGGGAGCAGGTGTTGCAGCATATAATGTGGAAC
CCGACTTTGCCATAATTGTGGAAGGGACAGTTGCAGCGGATGTTACTGATTCAGTACCCCATTTAGTTTCTACGGAATTG
GGCAAGGGACCTGCAATTTCTTTGATGGACAGGACAACTCTTTATGATAAAAAACTTATTGATAAAATTGCGAAAATAGC
CGATGAGAATAAGGTACCTTATCAATTTAGGAGAATAGCCAGCGGCGGCAATGATGCAGGGAAAATCCATCTTACAAAAG
GTGGCATAAAAACAATTGCTGTATCTGTCCCCTGCAGGTATATTCATTCTTTTAATTCTGTAGCCTTTTTAGAAGATTTT
AATAACACAGTTAAATTGGTTGATTTGATAATCAAAAATATTGAAAAGGAGGCTTTAATATGA

Upstream 100 bases:

>100_bases
ATACTTCAGTAGAAACTGCAAATATGAAAGATGTAATAAGTAGTGGTAAACTCTTAGCTTATTATATAGCCAATCTTCCA
GAGGAATTGGAGGGACACTT

Downstream 100 bases:

>100_bases
GTTTAAATATAGAATTGATAAAAAAACTTACACAAACTTATGGACCCTCAGGAAATGAGGATAAAGTGCTTGAAATTATA
AAAGCGGAAGTAAAGGATTT

Product: cellulase

Products: D-glucose; GDP

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MLLKELTEIMGASGDEKEIREKIKSIVEPYVDNVYVDKIGNLIACKKGKKDKPKIMLAAHMDEVGLMVKSVNEDGTLSFF
PVGGVDNRILVAKTVKVGEKGINGVIGAKPIHLQKRDEQQKPLDFDSLYIDIGATSKEEALKHVSPGDYVYFDSNFEILG
NGYVKAKALDDRIGCNVLIENLKNEYEYTVCAAFTVEEEVGLRGAGVAAYNVEPDFAIIVEGTVAADVTDSVPHLVSTEL
GKGPAISLMDRTTLYDKKLIDKIAKIADENKVPYQFRRIASGGNDAGKIHLTKGGIKTIAVSVPCRYIHSFNSVAFLEDF
NNTVKLVDLIIKNIEKEALI

Sequences:

>Translated_340_residues
MLLKELTEIMGASGDEKEIREKIKSIVEPYVDNVYVDKIGNLIACKKGKKDKPKIMLAAHMDEVGLMVKSVNEDGTLSFF
PVGGVDNRILVAKTVKVGEKGINGVIGAKPIHLQKRDEQQKPLDFDSLYIDIGATSKEEALKHVSPGDYVYFDSNFEILG
NGYVKAKALDDRIGCNVLIENLKNEYEYTVCAAFTVEEEVGLRGAGVAAYNVEPDFAIIVEGTVAADVTDSVPHLVSTEL
GKGPAISLMDRTTLYDKKLIDKIAKIADENKVPYQFRRIASGGNDAGKIHLTKGGIKTIAVSVPCRYIHSFNSVAFLEDF
NNTVKLVDLIIKNIEKEALI
>Mature_340_residues
MLLKELTEIMGASGDEKEIREKIKSIVEPYVDNVYVDKIGNLIACKKGKKDKPKIMLAAHMDEVGLMVKSVNEDGTLSFF
PVGGVDNRILVAKTVKVGEKGINGVIGAKPIHLQKRDEQQKPLDFDSLYIDIGATSKEEALKHVSPGDYVYFDSNFEILG
NGYVKAKALDDRIGCNVLIENLKNEYEYTVCAAFTVEEEVGLRGAGVAAYNVEPDFAIIVEGTVAADVTDSVPHLVSTEL
GKGPAISLMDRTTLYDKKLIDKIAKIADENKVPYQFRRIASGGNDAGKIHLTKGGIKTIAVSVPCRYIHSFNSVAFLEDF
NNTVKLVDLIIKNIEKEALI

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=344, Percent_Identity=35.7558139534884, Blast_Score=215, Evalue=3e-57,
Organism=Escherichia coli, GI1788727, Length=355, Percent_Identity=30.4225352112676, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI87082417, Length=333, Percent_Identity=32.1321321321321, Blast_Score=147, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: 3.2.1.4

Molecular weight: Translated: 37266; Mature: 37266

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKELTEIMGASGDEKEIREKIKSIVEPYVDNVYVDKIGNLIACKKGKKDKPKIMLAAH
CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEHHHCCCEEEECCCCCCCCCEEEEEC
MDEVGLMVKSVNEDGTLSFFPVGGVDNRILVAKTVKVGEKGINGVIGAKPIHLQKRDEQQ
CCHHHHEEEECCCCCCEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCC
KPLDFDSLYIDIGATSKEEALKHVSPGDYVYFDSNFEILGNGYVKAKALDDRIGCNVLIE
CCCCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHH
NLKNEYEYTVCAAFTVEEEVGLRGAGVAAYNVEPDFAIIVEGTVAADVTDSVPHLVSTEL
HHHCCCCEEEEEEEEEHHHCCCCCCCEEEEECCCCEEEEEECCEEECCCCCCCHHHHHCC
GKGPAISLMDRTTLYDKKLIDKIAKIADENKVPYQFRRIASGGNDAGKIHLTKGGIKTIA
CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEECCCCEEEE
VSVPCRYIHSFNSVAFLEDFNNTVKLVDLIIKNIEKEALI
EECCHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLKELTEIMGASGDEKEIREKIKSIVEPYVDNVYVDKIGNLIACKKGKKDKPKIMLAAH
CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEHHHCCCEEEECCCCCCCCCEEEEEC
MDEVGLMVKSVNEDGTLSFFPVGGVDNRILVAKTVKVGEKGINGVIGAKPIHLQKRDEQQ
CCHHHHEEEECCCCCCEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCC
KPLDFDSLYIDIGATSKEEALKHVSPGDYVYFDSNFEILGNGYVKAKALDDRIGCNVLIE
CCCCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHH
NLKNEYEYTVCAAFTVEEEVGLRGAGVAAYNVEPDFAIIVEGTVAADVTDSVPHLVSTEL
HHHCCCCEEEEEEEEEHHHCCCCCCCEEEEECCCCEEEEEECCEEECCCCCCCHHHHHCC
GKGPAISLMDRTTLYDKKLIDKIAKIADENKVPYQFRRIASGGNDAGKIHLTKGGIKTIA
CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEECCCCEEEE
VSVPCRYIHSFNSVAFLEDFNNTVKLVDLIIKNIEKEALI
EECCHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: GDPglucose; H2O

Specific reaction: GDP-glucose + H2O = D-glucose + GDP

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]