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The map label for this gene is rbsB [H]

Identifier: 167038836

GI number: 167038836

Start: 166556

End: 167479

Strand: Direct

Name: rbsB [H]

Synonym: Teth514_0166

Alternate gene names: 167038836

Gene position: 166556-167479 (Clockwise)

Preceding gene: 167038835

Following gene: 167038837

Centisome position: 6.78

GC content: 34.74

Gene sequence:

>924_bases
ATGAGAAAATCAAAAATTTTGTTCCTTTTATTAACATTTATTTTACCTGTTGCGTTAATTGCTGGATGCAGTACAGGTAA
TACCAATAATACTTCAAATGCTAAAGAAGAAAAGACTATAGGCTTGGTAATATCGACACTTAATAATCCATTTTTTGTAA
CATTGAAAGATGGAGCAGAAGCTAAGGCAAAAGAATTAGGCTATAAATTAATAGTAGCAGATTCACAGAATGACTCTTCA
AAAGAACTTTCTAATGTAGAAGATTTAATTCAACAAAAAGTAGACGTTTTGCTTATAAATCCTGTAGATAGCGATGCTGT
AGTTAATGCGATAAAAGAAGCAAATAGCAAAAATATACCAGTTATTACTTTGGACAGGTCTGCAAATGGTGGAGATGTTA
TTTGTCACATAGCTTCAGATAACGTAAAAGGTGGAGAAATGGCAGCAGAGTTTATTGCCAAAACGCTAAATGGGAAAGGA
AACGTAGTAGAACTTGAAGGCATACCAGGTACTTCCGCAGCAAGAGATAGAGGCAAAGGATTTGATGAAGCTATCGCTAA
ATATCCAGATATAAAAATTATAGCAAAACAAGCTGCTGATTTTGATCGTTCAAAAGGTTTATCAGTAATGGAAAATATCC
TTCAAGCCCAACCTAAAATTGATGCAGTATTTGCGCAAAATGATGAAATGGCATTAGGTGCAATAAAGGCAATAGAGAGT
GCAAATAGGCAAGGAATTTTAGTAGTTGGATTCGATGGGACAGATGATGCGTTGAAAGCTATAAAAGATGGCAAAATGGC
TGCAACGATTGCTCAGCAACCAGCTTTAATAGGTTCTCTTGGAGTAGAAATGGCTGACAAATATCTAAAAGGTGAAAAGG
TAGAAAAATTTATACCAGCTGAGCTTAAACTTATAACGAAGTGA

Upstream 100 bases:

>100_bases
AAAAAAGAAAGTAGATAAAGGGGGTGTTTTAGGAAGGTTTTAATTGAAAAACAAAAAGTTTTAAAAATTAAAAATTTAAT
TAAAAGGGGAGAGTTGAATT

Downstream 100 bases:

>100_bases
TATGATATCAATACAGATAAGGAAAATAGAAAAACGAATGCGAATCTAAAAAGCCTGCCGTGTTTTGGGCGGGCTTTTTT
ACGTGCGCCCGGCATGGGCG

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MRKSKILFLLLTFILPVALIAGCSTGNTNNTSNAKEEKTIGLVISTLNNPFFVTLKDGAEAKAKELGYKLIVADSQNDSS
KELSNVEDLIQQKVDVLLINPVDSDAVVNAIKEANSKNIPVITLDRSANGGDVICHIASDNVKGGEMAAEFIAKTLNGKG
NVVELEGIPGTSAARDRGKGFDEAIAKYPDIKIIAKQAADFDRSKGLSVMENILQAQPKIDAVFAQNDEMALGAIKAIES
ANRQGILVVGFDGTDDALKAIKDGKMAATIAQQPALIGSLGVEMADKYLKGEKVEKFIPAELKLITK

Sequences:

>Translated_307_residues
MRKSKILFLLLTFILPVALIAGCSTGNTNNTSNAKEEKTIGLVISTLNNPFFVTLKDGAEAKAKELGYKLIVADSQNDSS
KELSNVEDLIQQKVDVLLINPVDSDAVVNAIKEANSKNIPVITLDRSANGGDVICHIASDNVKGGEMAAEFIAKTLNGKG
NVVELEGIPGTSAARDRGKGFDEAIAKYPDIKIIAKQAADFDRSKGLSVMENILQAQPKIDAVFAQNDEMALGAIKAIES
ANRQGILVVGFDGTDDALKAIKDGKMAATIAQQPALIGSLGVEMADKYLKGEKVEKFIPAELKLITK
>Mature_307_residues
MRKSKILFLLLTFILPVALIAGCSTGNTNNTSNAKEEKTIGLVISTLNNPFFVTLKDGAEAKAKELGYKLIVADSQNDSS
KELSNVEDLIQQKVDVLLINPVDSDAVVNAIKEANSKNIPVITLDRSANGGDVICHIASDNVKGGEMAAEFIAKTLNGKG
NVVELEGIPGTSAARDRGKGFDEAIAKYPDIKIIAKQAADFDRSKGLSVMENILQAQPKIDAVFAQNDEMALGAIKAIES
ANRQGILVVGFDGTDDALKAIKDGKMAATIAQQPALIGSLGVEMADKYLKGEKVEKFIPAELKLITK

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=298, Percent_Identity=57.3825503355705, Blast_Score=332, Evalue=2e-92,
Organism=Escherichia coli, GI1790526, Length=279, Percent_Identity=36.2007168458781, Blast_Score=151, Evalue=5e-38,
Organism=Escherichia coli, GI1790674, Length=242, Percent_Identity=38.0165289256198, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1789990, Length=263, Percent_Identity=31.5589353612167, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1790194, Length=224, Percent_Identity=27.2321428571429, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788473, Length=253, Percent_Identity=29.2490118577075, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787948, Length=230, Percent_Identity=26.5217391304348, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788898, Length=280, Percent_Identity=26.7857142857143, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786268, Length=209, Percent_Identity=25.8373205741627, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786540, Length=276, Percent_Identity=27.536231884058, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 32655; Mature: 32655

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSKILFLLLTFILPVALIAGCSTGNTNNTSNAKEEKTIGLVISTLNNPFFVTLKDGAE
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHEEEEEECCCCEEEEECCCCC
AKAKELGYKLIVADSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVNAIKEANSKNIP
HHHHHCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCC
VITLDRSANGGDVICHIASDNVKGGEMAAEFIAKTLNGKGNVVELEGIPGTSAARDRGKG
EEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCC
FDEAIAKYPDIKIIAKQAADFDRSKGLSVMENILQAQPKIDAVFAQNDEMALGAIKAIES
HHHHHHHCCCCEEEEHHHCCCCHHCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHC
ANRQGILVVGFDGTDDALKAIKDGKMAATIAQQPALIGSLGVEMADKYLKGEKVEKFIPA
CCCCEEEEEEECCCHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCC
ELKLITK
CEEEECC
>Mature Secondary Structure
MRKSKILFLLLTFILPVALIAGCSTGNTNNTSNAKEEKTIGLVISTLNNPFFVTLKDGAE
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHEEEEEECCCCEEEEECCCCC
AKAKELGYKLIVADSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVNAIKEANSKNIP
HHHHHCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCC
VITLDRSANGGDVICHIASDNVKGGEMAAEFIAKTLNGKGNVVELEGIPGTSAARDRGKG
EEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCC
FDEAIAKYPDIKIIAKQAADFDRSKGLSVMENILQAQPKIDAVFAQNDEMALGAIKAIES
HHHHHHHCCCCEEEEHHHCCCCHHCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHC
ANRQGILVVGFDGTDDALKAIKDGKMAATIAQQPALIGSLGVEMADKYLKGEKVEKFIPA
CCCCEEEEEEECCCHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCC
ELKLITK
CEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]