Click here to switch to the map view.

The map label for this gene is rnfD [H]

Identifier: 167038753

GI number: 167038753

Start: 82024

End: 83031

Strand: Direct

Name: rnfD [H]

Synonym: Teth514_0080

Alternate gene names: 167038753

Gene position: 82024-83031 (Clockwise)

Preceding gene: 167038752

Following gene: 167038754

Centisome position: 3.34

GC content: 35.12

Gene sequence:

>1008_bases
ATGGCATCTAAAGTGCAAGAAGTCGTTTTAGAGAATAAGTTGTTAGTTTCTTCATCTCCTCATATAAGATCTAATGAATC
GGTACAGAGGATAATGTTAGATGTGGTAATAGCTCTTACACCGGCTATTATAGGAAGTGTATACTTGTTTGGTTTAAATG
CTTTAAAATTGATATTAATTTCAGTAGCCTCATCTGTTTTATTCGAAGCACTAATTCAGAAATTATTTAAAAAACCTATT
ACTATAACAGATTTTTCTGCTGCAATAACCGGTATATTAATCGCGTTTAATTTACCAGCCAGTGCCCCGTGGTGGCTACC
AGTAATAGGCTCTGCTTTTGCAATAATAGTAGTAAAACAACTTTTTGGTGGTTTAGGTGCGAATTTTATGAATCCAGCAT
TAGCAGCGAGAGCAATGTTGATGACTTCATGGCCAGTTCACATGACAAACTATACTGGCACTAGACCGGACGTAGTCACA
TCAGCTACACCATTATCCATAATGGGCACTAGACCGGACGTAGTCACATCAGCTACACCATTATCCATAATGAAGTACGG
TACAGGAGCTGAACTTCCAACATTGAGGGATATGTTTATAGGTAATATTCCTGGAGTTATTGGAGAAACTTCTGCATTAT
TGCTGTTAATAGGTGCTGTTTATTTGATAATAAGGAAAGTTATAGATTGGAAAATACCAGTATTTTACATAGGGACAACC
TTTATTATGTTATTATTATTAGGAGTTGAACCTAAATTATTACCATATCATATATTAGGCGGTGGATTAATACTTGGTGC
TTTTTATATGGCTACAGATTATTCTTCCTCGCCAGTAACTCCTTTAGGTAGAATTATATTTGCAGTTGGAGCAGGTATAT
TAACAGCAATAATTAGAGTTAAAGGAGCTTATCCAGAAGGAGTATCTTATTCAATACTATTGATGAATGTTGCGACTCCA
TTAATTGAGAAATTTACTAAACCTAATGTATTTGGGAAGGTGAAATAG

Upstream 100 bases:

>100_bases
TTATATATGTCCTGCTAAAAGACCTTTGGCAGAATCTATAAGACTAGCAAAAAGAGAAATAATTGCTAAAAAGAAATCAA
AATAGATAGGAGGATATAAA

Downstream 100 bases:

>100_bases
ATGAAGGAAATAACAAAAATAGGTTTAATTTTACTTTTGATAACTGCTGTTGCTGGAGTAATATTAGGAGTTTCGAATGC
AGTTACTTCAGAAAAGATAG

Product: RnfABCDGE type electron transport complex subunit D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MASKVQEVVLENKLLVSSSPHIRSNESVQRIMLDVVIALTPAIIGSVYLFGLNALKLILISVASSVLFEALIQKLFKKPI
TITDFSAAITGILIAFNLPASAPWWLPVIGSAFAIIVVKQLFGGLGANFMNPALAARAMLMTSWPVHMTNYTGTRPDVVT
SATPLSIMGTRPDVVTSATPLSIMKYGTGAELPTLRDMFIGNIPGVIGETSALLLLIGAVYLIIRKVIDWKIPVFYIGTT
FIMLLLLGVEPKLLPYHILGGGLILGAFYMATDYSSSPVTPLGRIIFAVGAGILTAIIRVKGAYPEGVSYSILLMNVATP
LIEKFTKPNVFGKVK

Sequences:

>Translated_335_residues
MASKVQEVVLENKLLVSSSPHIRSNESVQRIMLDVVIALTPAIIGSVYLFGLNALKLILISVASSVLFEALIQKLFKKPI
TITDFSAAITGILIAFNLPASAPWWLPVIGSAFAIIVVKQLFGGLGANFMNPALAARAMLMTSWPVHMTNYTGTRPDVVT
SATPLSIMGTRPDVVTSATPLSIMKYGTGAELPTLRDMFIGNIPGVIGETSALLLLIGAVYLIIRKVIDWKIPVFYIGTT
FIMLLLLGVEPKLLPYHILGGGLILGAFYMATDYSSSPVTPLGRIIFAVGAGILTAIIRVKGAYPEGVSYSILLMNVATP
LIEKFTKPNVFGKVK
>Mature_334_residues
ASKVQEVVLENKLLVSSSPHIRSNESVQRIMLDVVIALTPAIIGSVYLFGLNALKLILISVASSVLFEALIQKLFKKPIT
ITDFSAAITGILIAFNLPASAPWWLPVIGSAFAIIVVKQLFGGLGANFMNPALAARAMLMTSWPVHMTNYTGTRPDVVTS
ATPLSIMGTRPDVVTSATPLSIMKYGTGAELPTLRDMFIGNIPGVIGETSALLLLIGAVYLIIRKVIDWKIPVFYIGTTF
IMLLLLGVEPKLLPYHILGGGLILGAFYMATDYSSSPVTPLGRIIFAVGAGILTAIIRVKGAYPEGVSYSILLMNVATPL
IEKFTKPNVFGKVK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=348, Percent_Identity=34.7701149425287, Blast_Score=193, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 35918; Mature: 35786

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKVQEVVLENKLLVSSSPHIRSNESVQRIMLDVVIALTPAIIGSVYLFGLNALKLILI
CCHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVASSVLFEALIQKLFKKPITITDFSAAITGILIAFNLPASAPWWLPVIGSAFAIIVVKQ
HHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHH
LFGGLGANFMNPALAARAMLMTSWPVHMTNYTGTRPDVVTSATPLSIMGTRPDVVTSATP
HHHHCCCHHCCHHHHHHHHHHHCCCEEECCCCCCCCCCEECCCCCEEECCCCCHHCCCCC
LSIMKYGTGAELPTLRDMFIGNIPGVIGETSALLLLIGAVYLIIRKVIDWKIPVFYIGTT
HHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FIMLLLLGVEPKLLPYHILGGGLILGAFYMATDYSSSPVTPLGRIIFAVGAGILTAIIRV
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KGAYPEGVSYSILLMNVATPLIEKFTKPNVFGKVK
CCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ASKVQEVVLENKLLVSSSPHIRSNESVQRIMLDVVIALTPAIIGSVYLFGLNALKLILI
CHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVASSVLFEALIQKLFKKPITITDFSAAITGILIAFNLPASAPWWLPVIGSAFAIIVVKQ
HHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHH
LFGGLGANFMNPALAARAMLMTSWPVHMTNYTGTRPDVVTSATPLSIMGTRPDVVTSATP
HHHHCCCHHCCHHHHHHHHHHHCCCEEECCCCCCCCCCEECCCCCEEECCCCCHHCCCCC
LSIMKYGTGAELPTLRDMFIGNIPGVIGETSALLLLIGAVYLIIRKVIDWKIPVFYIGTT
HHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FIMLLLLGVEPKLLPYHILGGGLILGAFYMATDYSSSPVTPLGRIIFAVGAGILTAIIRV
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KGAYPEGVSYSILLMNVATPLIEKFTKPNVFGKVK
CCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA