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The map label for this gene is rnfC [H]

Identifier: 167038752

GI number: 167038752

Start: 80677

End: 82008

Strand: Direct

Name: rnfC [H]

Synonym: Teth514_0079

Alternate gene names: 167038752

Gene position: 80677-82008 (Clockwise)

Preceding gene: 167038751

Following gene: 167038753

Centisome position: 3.28

GC content: 36.11

Gene sequence:

>1332_bases
ATGAAGTTAGAAAATCTCACTTTTAAGGGTGGGGTAAATGTACCACATCATAAGGATTTAACTGAGGGGCTTCCTATAGA
AAGAGCAAAGGAACCGGATGTAGTTTATATTCCATTGCATCAACATGTTGGAGCACCTTGTGAACCTTTAGTGAAAGTAG
GAGATACTGTAAAAGTAGGTCAAAAGATTGGGCAATCTGATGCATTTGTATCTGCTCCGGTACATTCATCTGTCTCGGGC
ATAGTTAAAGACATTACGACTATGTTTATACCTACTGGTCAAAGGGTTAAATGTGTAATTATAGAATCAGATGGAAAGAA
TGAGCTAGACGAGTCTGTAAAACCAAAAGGAAGCCTGGAAGATTTATCTCCTAAAGAAATTATTGAGATAATTAGAGAGG
CTGGTATTACAGGAATGGGAGGAGCTGGATTCCCAACTCATGTTAAATTATCGCCTCCTTCTGACAAAAAAATCGATACT
ATTCTTGTAAATGGAGCAGAGTGTGAACCTTATTTAACAACAGACCATAGATTGATGGTTGAATATCCTGAAAAGATAGT
ATTTGGTTTAAAAGCAATTATGAAAGCAGTAGGAGTAGAAAGAGGAATTATTGGAGTAGAAAAAAACAAACCTGATGCCA
TATTGGCTTTAAGAGAAGCAAGCAAAGATGAGAAAAACATTCAAATAGCAACTTTAAAAGTTAAATATCCTCAAGGGGAT
GAGAAAAGATTAATTAATGCTATATTAGGACGAATTGTACCATCTGGCGGATTGCCAATGGACGTAGGAGTTATAGTAGT
CAATGCCGCTACTACTAAAGCGGTGGCTGATGCGATATTAGAAGGTAAACCTTTATATGAAAGAGTAACTACGATTACAG
GCCATGGAATTAAACAACCAAAAAATCTCCTTGTTAAAATAGGAACGCCTCTTAAAGATTTGATAGAACAGTGTGGGGGA
TTTACTGAAGACTCACCAGGCAAGATTATCAGTGGTGGGCCTATGATGGGAATAGCTCAGCATTCTCTAGATGTACCGAT
TATAAAGGGAACTGGTGGAATATTGATATTGACAAAAAAGGAAGCAAGACCAGAACAAGTACAACCATGTATTAAATGTG
GTAAATGTGTTGAAGTATGTCCTGTAAACTTACTACCATTGTATATAAGTAGTTATTCTCTCAAGAAAAACTTTGATAAG
GCAGAAGAATACAATGCTCTTGATTGTGTTGAATGTGGATCATGTTCTTATATATGTCCTGCTAAAAGACCTTTGGCAGA
ATCTATAAGACTAGCAAAAAGAGAAATAATTGCTAAAAAGAAATCAAAATAG

Upstream 100 bases:

>100_bases
ATAATACTCAACATTTTTTCATTTTTAATATATTTTAATATATGAATATTATTCATATATTAGCTACACAAAAGGATAAT
AAAAAAGAGGTGAAAAAAGA

Downstream 100 bases:

>100_bases
ATAGGAGGATATAAAATGGCATCTAAAGTGCAAGAAGTCGTTTTAGAGAATAAGTTGTTAGTTTCTTCATCTCCTCATAT
AAGATCTAATGAATCGGTAC

Product: RnfABCDGE type electron transport complex subunit C

Products: NA

Alternate protein names: Nitrogen fixation protein rnfC [H]

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MKLENLTFKGGVNVPHHKDLTEGLPIERAKEPDVVYIPLHQHVGAPCEPLVKVGDTVKVGQKIGQSDAFVSAPVHSSVSG
IVKDITTMFIPTGQRVKCVIIESDGKNELDESVKPKGSLEDLSPKEIIEIIREAGITGMGGAGFPTHVKLSPPSDKKIDT
ILVNGAECEPYLTTDHRLMVEYPEKIVFGLKAIMKAVGVERGIIGVEKNKPDAILALREASKDEKNIQIATLKVKYPQGD
EKRLINAILGRIVPSGGLPMDVGVIVVNAATTKAVADAILEGKPLYERVTTITGHGIKQPKNLLVKIGTPLKDLIEQCGG
FTEDSPGKIISGGPMMGIAQHSLDVPIIKGTGGILILTKKEARPEQVQPCIKCGKCVEVCPVNLLPLYISSYSLKKNFDK
AEEYNALDCVECGSCSYICPAKRPLAESIRLAKREIIAKKKSK

Sequences:

>Translated_443_residues
MKLENLTFKGGVNVPHHKDLTEGLPIERAKEPDVVYIPLHQHVGAPCEPLVKVGDTVKVGQKIGQSDAFVSAPVHSSVSG
IVKDITTMFIPTGQRVKCVIIESDGKNELDESVKPKGSLEDLSPKEIIEIIREAGITGMGGAGFPTHVKLSPPSDKKIDT
ILVNGAECEPYLTTDHRLMVEYPEKIVFGLKAIMKAVGVERGIIGVEKNKPDAILALREASKDEKNIQIATLKVKYPQGD
EKRLINAILGRIVPSGGLPMDVGVIVVNAATTKAVADAILEGKPLYERVTTITGHGIKQPKNLLVKIGTPLKDLIEQCGG
FTEDSPGKIISGGPMMGIAQHSLDVPIIKGTGGILILTKKEARPEQVQPCIKCGKCVEVCPVNLLPLYISSYSLKKNFDK
AEEYNALDCVECGSCSYICPAKRPLAESIRLAKREIIAKKKSK
>Mature_443_residues
MKLENLTFKGGVNVPHHKDLTEGLPIERAKEPDVVYIPLHQHVGAPCEPLVKVGDTVKVGQKIGQSDAFVSAPVHSSVSG
IVKDITTMFIPTGQRVKCVIIESDGKNELDESVKPKGSLEDLSPKEIIEIIREAGITGMGGAGFPTHVKLSPPSDKKIDT
ILVNGAECEPYLTTDHRLMVEYPEKIVFGLKAIMKAVGVERGIIGVEKNKPDAILALREASKDEKNIQIATLKVKYPQGD
EKRLINAILGRIVPSGGLPMDVGVIVVNAATTKAVADAILEGKPLYERVTTITGHGIKQPKNLLVKIGTPLKDLIEQCGG
FTEDSPGKIISGGPMMGIAQHSLDVPIIKGTGGILILTKKEARPEQVQPCIKCGKCVEVCPVNLLPLYISSYSLKKNFDK
AEEYNALDCVECGSCSYICPAKRPLAESIRLAKREIIAKKKSK

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfB [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=444, Percent_Identity=37.1621621621622, Blast_Score=298, Evalue=4e-82,
Organism=Escherichia coli, GI1788620, Length=243, Percent_Identity=26.7489711934156, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 47765; Mature: 47765

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLENLTFKGGVNVPHHKDLTEGLPIERAKEPDVVYIPLHQHVGAPCEPLVKVGDTVKVG
CCCCCEEEECCCCCCCCCCHHCCCCCCCCCCCCEEEEECHHHCCCCCHHHHHCCCHHHHH
QKIGQSDAFVSAPVHSSVSGIVKDITTMFIPTGQRVKCVIIESDGKNELDESVKPKGSLE
HHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHCCCCCCCC
DLSPKEIIEIIREAGITGMGGAGFPTHVKLSPPSDKKIDTILVNGAECEPYLTTDHRLMV
CCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCEEEE
EYPEKIVFGLKAIMKAVGVERGIIGVEKNKPDAILALREASKDEKNIQIATLKVKYPQGD
ECHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEHHCCCCCCCEEEEEEEEECCCCH
EKRLINAILGRIVPSGGLPMDVGVIVVNAATTKAVADAILEGKPLYERVTTITGHGIKQP
HHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCC
KNLLVKIGTPLKDLIEQCGGFTEDSPGKIISGGPMMGIAQHSLDVPIIKGTGGILILTKK
CEEEEECCCCHHHHHHHHCCCCCCCCCCEEECCCCEEEHHHCCCCEEEECCCCEEEEECC
EARPEQVQPCIKCGKCVEVCPVNLLPLYISSYSLKKNFDKAEEYNALDCVECGSCSYICP
CCCHHHHHHHHHHCCEEHHCCCCEEEHHHHHHHHHCCCCHHHHCCCCCCEECCCCCEECC
AKRPLAESIRLAKREIIAKKKSK
CCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKLENLTFKGGVNVPHHKDLTEGLPIERAKEPDVVYIPLHQHVGAPCEPLVKVGDTVKVG
CCCCCEEEECCCCCCCCCCHHCCCCCCCCCCCCEEEEECHHHCCCCCHHHHHCCCHHHHH
QKIGQSDAFVSAPVHSSVSGIVKDITTMFIPTGQRVKCVIIESDGKNELDESVKPKGSLE
HHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHCCCCCCCC
DLSPKEIIEIIREAGITGMGGAGFPTHVKLSPPSDKKIDTILVNGAECEPYLTTDHRLMV
CCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCEEEE
EYPEKIVFGLKAIMKAVGVERGIIGVEKNKPDAILALREASKDEKNIQIATLKVKYPQGD
ECHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEHHCCCCCCCEEEEEEEEECCCCH
EKRLINAILGRIVPSGGLPMDVGVIVVNAATTKAVADAILEGKPLYERVTTITGHGIKQP
HHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCC
KNLLVKIGTPLKDLIEQCGGFTEDSPGKIISGGPMMGIAQHSLDVPIIKGTGGILILTKK
CEEEEECCCCHHHHHHHHCCCCCCCCCCEEECCCCEEEHHHCCCCEEEECCCCEEEEECC
EARPEQVQPCIKCGKCVEVCPVNLLPLYISSYSLKKNFDKAEEYNALDCVECGSCSYICP
CCCHHHHHHHHHHCCEEHHCCCCEEEHHHHHHHHHCCCCHHHHCCCCCCEECCCCCEECC
AKRPLAESIRLAKREIIAKKKSK
CCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8264535; 9492268; 9154934 [H]