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Identifier: 16519719

GI number: 16519719

Start: 498362

End: 499117

Strand: Direct

Name: Not Available

Synonym: NGR_a03870

Alternate gene names: 16519719

Gene position: 498362-499117 (Clockwise)

Preceding gene: 16519720

Following gene: 16519716

Centisome position: 92.95

GC content: 60.58

Gene sequence:

>756_bases
TTGCTCGGCCGCGAGGATATTCGGACCTATCAGGTCTATCTGGCCAACGAGAAGAAGTTGGCGCCCGGCTCGATCCACAT
CGCCCTTTCGGCGTTGCGCTTTTTCTTCAACGTCACGCTCGAGAGGGACTGGGCGCCTGAAGAGGTATTGCCGCTTCCGA
AGAAACCGCAAAAGCTGCCGATCATCCTCAGTCCCGATGAAGTACAGCACTTTCTTGGCTGCGTGGCCGATGTCAAACAC
CACGCCATCCTGACGACGTGCTATGCCGCCGGCCTGCGCATTTCGGAAGCGGTGCAGCTGAAGCCTACGGATATCGACAG
CCAGAGAATGGTTGTGCGTGTCGAGCATGGTAAAGGCCAAAAGGACCGCTATGTGATGCTGTCGCCCAAGCTCCTCGAGA
TCCTTCGCGACTATTGGAGGATGTGGCGGCCAGAGGCGTGGCTCTTCCCTGGAGATCGCGCCGGTCACCCAATTACTCGG
TATGCAGTTGGGCAAGCCTGCGTGAAGCCACACGATCTCTCCCGCTTGTCGAAACCGGTGACACCGCACAGCTTGCGGCA
TGCCTTCGTCGTCCATCTCCTGGAGGCCGGCGCCGACGTGCGCACCATTCAGCCGCTGCTCGGTCACCGCAGCCTCGCAA
CCACCGCCCACTACCTGCGCATCGCCACCAACAAGGTCTGCGCTACGGAAAGCCCCTTCGAGCTTTTGCCACGTCCAGCG
CCCACCCCGCCGCCCTCCAAGCCTCAGTACTTCTGA

Upstream 100 bases:

>100_bases
AGGAGCCCCAACTGCGAGAGGATGAGACGGCTGTTTGGCAGCCTATCCCATCAGACAGAGGAGCTCATCATGACCCCGAC
ACTTCGGCAAGGCGCCGGAC

Downstream 100 bases:

>100_bases
ACTCGCGCCCATGCCCCGTTCGAGGCCGGAAGTGGCGGATATATTCCGTCGCTATGGCGAGTCCTATCGTGCCCAGCACA
CGTCGCTGTCGACCGCTCAG

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MLGREDIRTYQVYLANEKKLAPGSIHIALSALRFFFNVTLERDWAPEEVLPLPKKPQKLPIILSPDEVQHFLGCVADVKH
HAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEHGKGQKDRYVMLSPKLLEILRDYWRMWRPEAWLFPGDRAGHPITR
YAVGQACVKPHDLSRLSKPVTPHSLRHAFVVHLLEAGADVRTIQPLLGHRSLATTAHYLRIATNKVCATESPFELLPRPA
PTPPPSKPQYF

Sequences:

>Translated_251_residues
MLGREDIRTYQVYLANEKKLAPGSIHIALSALRFFFNVTLERDWAPEEVLPLPKKPQKLPIILSPDEVQHFLGCVADVKH
HAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEHGKGQKDRYVMLSPKLLEILRDYWRMWRPEAWLFPGDRAGHPITR
YAVGQACVKPHDLSRLSKPVTPHSLRHAFVVHLLEAGADVRTIQPLLGHRSLATTAHYLRIATNKVCATESPFELLPRPA
PTPPPSKPQYF
>Mature_251_residues
MLGREDIRTYQVYLANEKKLAPGSIHIALSALRFFFNVTLERDWAPEEVLPLPKKPQKLPIILSPDEVQHFLGCVADVKH
HAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEHGKGQKDRYVMLSPKLLEILRDYWRMWRPEAWLFPGDRAGHPITR
YAVGQACVKPHDLSRLSKPVTPHSLRHAFVVHLLEAGADVRTIQPLLGHRSLATTAHYLRIATNKVCATESPFELLPRPA
PTPPPSKPQYF

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=223, Percent_Identity=37.219730941704, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1790244, Length=226, Percent_Identity=30.5309734513274, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 28449; Mature: 28449

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGREDIRTYQVYLANEKKLAPGSIHIALSALRFFFNVTLERDWAPEEVLPLPKKPQKLP
CCCHHHCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHEECCCCCCHHCCCCCCCCCCCC
IILSPDEVQHFLGCVADVKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEHGKGQ
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCEEEEEEECCCCC
KDRYVMLSPKLLEILRDYWRMWRPEAWLFPGDRAGHPITRYAVGQACVKPHDLSRLSKPV
CCCEEEECHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCC
TPHSLRHAFVVHLLEAGADVRTIQPLLGHRSLATTAHYLRIATNKVCATESPFELLPRPA
CHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCEECCCCCHHHCCCCC
PTPPPSKPQYF
CCCCCCCCCCC
>Mature Secondary Structure
MLGREDIRTYQVYLANEKKLAPGSIHIALSALRFFFNVTLERDWAPEEVLPLPKKPQKLP
CCCHHHCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHEECCCCCCHHCCCCCCCCCCCC
IILSPDEVQHFLGCVADVKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEHGKGQ
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCEEEEEEECCCCC
KDRYVMLSPKLLEILRDYWRMWRPEAWLFPGDRAGHPITRYAVGQACVKPHDLSRLSKPV
CCCEEEECHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCC
TPHSLRHAFVVHLLEAGADVRTIQPLLGHRSLATTAHYLRIATNKVCATESPFELLPRPA
CHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCEECCCCCHHHCCCCC
PTPPPSKPQYF
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]