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The map label for this gene is traF

Identifier: 16519707

GI number: 16519707

Start: 516336

End: 516902

Strand: Direct

Name: traF

Synonym: NGR_a03990

Alternate gene names: 16519707

Gene position: 516336-516902 (Clockwise)

Preceding gene: 16519708

Following gene: 16519706

Centisome position: 96.3

GC content: 64.02

Gene sequence:

>567_bases
ATGAACATTCCTCTCGTTGAATTGACCTCGAGGAGGCGACGCGGTAAGCCGCTCCTCCTCGGGTTAGCCACGATGACAAT
GGCGGCGGTCGGCACGATCTCGGCCGCCTGGTTCGGCGGCTACCGGATCAATCTCACGCCGAGTGAACCTCTCGGTCTCT
GGCGTATCGTCAAGATCGATCGCCCATCCGCCGTCGGCGATCTCGTCTTCATTTGTCCGCCTCGAACCTCGGCCATGCGG
GAGGCGCGAATGCGTGGTTATCTGCGCGCCGGCCTATGCCCGGGCGGCATCGCGCCGCTCATCAAGTCGGTCATCGCAGT
TGCAGGGCAACGGGTCGAGGTGGGGGTCAGCGTCAACGTCGACGGGCATCCTGTCCCCTCGTCCGCTCTTGCTCTGCGCG
ACGGACAGGGACGGCCGATGAAGCCGTTCTCGGGCGGAATCGTGCCGACCGATTACGTGTTCCTGCACTCGCCGTTCTCG
GGCTCCTATGACTCCCGTTATTTCGGTCCGATCCCGGCCGCCGGCATTCTCGGCCTGGCGCAAGAAGTCCTGACCTATGC
GCCGTGA

Upstream 100 bases:

>100_bases
TGCGTACGGTGCAGCAACTCAATGCCCATGAGCGAACGATCGAAGCCCTAAAGCAGGCCGAGACGCTGCGGCAGACGAAG
AGCCAGGGGCTGTCGCTGAA

Downstream 100 bases:

>100_bases
TCACCTCCAGCCGAGACTGCTGACCATCGCTTCAATTGTAGTCGGAACGGTCGGGTGGAGCGGTTATGCCCTCCTTCTTC
CGGTCGCACTGGCATTCCCA

Product: conjugal transfer pilin processing protease TraF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MNIPLVELTSRRRRGKPLLLGLATMTMAAVGTISAAWFGGYRINLTPSEPLGLWRIVKIDRPSAVGDLVFICPPRTSAMR
EARMRGYLRAGLCPGGIAPLIKSVIAVAGQRVEVGVSVNVDGHPVPSSALALRDGQGRPMKPFSGGIVPTDYVFLHSPFS
GSYDSRYFGPIPAAGILGLAQEVLTYAP

Sequences:

>Translated_188_residues
MNIPLVELTSRRRRGKPLLLGLATMTMAAVGTISAAWFGGYRINLTPSEPLGLWRIVKIDRPSAVGDLVFICPPRTSAMR
EARMRGYLRAGLCPGGIAPLIKSVIAVAGQRVEVGVSVNVDGHPVPSSALALRDGQGRPMKPFSGGIVPTDYVFLHSPFS
GSYDSRYFGPIPAAGILGLAQEVLTYAP
>Mature_188_residues
MNIPLVELTSRRRRGKPLLLGLATMTMAAVGTISAAWFGGYRINLTPSEPLGLWRIVKIDRPSAVGDLVFICPPRTSAMR
EARMRGYLRAGLCPGGIAPLIKSVIAVAGQRVEVGVSVNVDGHPVPSSALALRDGQGRPMKPFSGGIVPTDYVFLHSPFS
GSYDSRYFGPIPAAGILGLAQEVLTYAP

Specific function: Involved in conjugal transfer of the plasmid (Potential)

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Periplasm (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S26C family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRAF_RHISN (P55417)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443827.1
- ProteinModelPortal:   P55417
- SMR:   P55417
- MEROPS:   S26.014
- GeneID:   962284
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a03990
- HOGENOM:   HBG680055
- ProtClustDB:   PRK13838
- GO:   GO:0000746
- InterPro:   IPR015927
- InterPro:   IPR011056
- InterPro:   IPR019533
- InterPro:   IPR014139
- Gene3D:   G3DSA:2.10.109.10
- TIGRFAMs:   TIGR02771

Pfam domain/function: PF10502 Peptidase_S26; SSF51306 Pept_S24_S26_C

EC number: NA

Molecular weight: Translated: 20000; Mature: 20000

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIPLVELTSRRRRGKPLLLGLATMTMAAVGTISAAWFGGYRINLTPSEPLGLWRIVKID
CCCCCCHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHEECCEEEEECCCCCCCEEEEEEEC
RPSAVGDLVFICPPRTSAMREARMRGYLRAGLCPGGIAPLIKSVIAVAGQRVEVGVSVNV
CCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEC
DGHPVPSSALALRDGQGRPMKPFSGGIVPTDYVFLHSPFSGSYDSRYFGPIPAAGILGLA
CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH
QEVLTYAP
HHHHHCCC
>Mature Secondary Structure
MNIPLVELTSRRRRGKPLLLGLATMTMAAVGTISAAWFGGYRINLTPSEPLGLWRIVKID
CCCCCCHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHEECCEEEEECCCCCCCEEEEEEEC
RPSAVGDLVFICPPRTSAMREARMRGYLRAGLCPGGIAPLIKSVIAVAGQRVEVGVSVNV
CCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEC
DGHPVPSSALALRDGQGRPMKPFSGGIVPTDYVFLHSPFSGSYDSRYFGPIPAAGILGLA
CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH
QEVLTYAP
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424