| Definition | Brucella suis ATCC 23445 chromosome II, complete genome. |
|---|---|
| Accession | NC_010167 |
| Length | 1,400,844 |
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The map label for this gene is nikD
Identifier: 163844926
GI number: 163844926
Start: 771982
End: 772770
Strand: Reverse
Name: nikD
Synonym: BSUIS_B0793
Alternate gene names: 163844926
Gene position: 772770-771982 (Counterclockwise)
Preceding gene: 163844927
Following gene: 163844925
Centisome position: 55.16
GC content: 58.94
Gene sequence:
>789_bases TTGACCAGGAAGACACTCGCCATTGAAGGCCTGACCGCGACCACCGTGATAGACGGGCAGCAGCGCGTCCTTGTCGATAA TCTTTCTCTTGGCGTTCAACGCGGACGCATTCTCGCACTGGTCGGAGCAAGCGGTTCCGGCAAGTCGATGACCTGTTCGG CAGCACTTGGTGTCCTGCCGCCCGGCGTCACGGCCTCGCGCGGGCGTGTGACGATAGATGGGGTTCCTTATGCGGCAAAC GCGCTGCGCGGGCGGCATGTCGCGACCATCATGCAAAACCCGCGCAGCGCCTTTAATCCTGTTCGCACCATGCGCGACCA TGCCATCGAGACCCTTCAGGCGCTTGGCAAGCTCAGTTCAAATCCGCAGGATCAGATAGTGCATTGTATGCGGGCGGCCG GGCTGGAAGACGTTAAAACCATCCTCTCCTTACATCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGGATGATGATTGCG CTGGCGCTGCTCAGTGAGGCGCCATTCCTGTTTGCCGATGAGCCGACCACCGATCTTGATCTCGTCGTCCAGCTTCGGGT TCTGGAGCTTCTGGAAAAACTGGTCGAGGAACGCGACCTCGGCATTCTTCTTGTAACCCATGATATGGGCGTCGTCGCTA GACTGGCCCATGATGTCGCCGTCCTCGATCATGGCCGCCTTATCGAACAGGCCCCGGTGATGGATATCTTTCAAACGCCC GGACATGAGGTCACACGCATGCTGGTCAGCGCGCATCTGTCGCTCTACGGTATGGAGCTCAATGCATGA
Upstream 100 bases:
>100_bases GGCCGGGGCTGGCGCTGTTTTTGAGCGTCATGGCCTTCAACATTCTGGGGGACGCCTTGCGTGACAGCCTCGACCCGCAT CTCAAGGCGGAGCACAGCCA
Downstream 100 bases:
>100_bases GCCTGATCAGCGCAGACAATATCGTCAAAATCTATCAATCACATTCGCTCGTGGGTGCGAGCGCGCGTAAGACTGTGCTG CATGATATATCGATTTCTAT
Product: nickel transporter ATP-binding protein NikD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MTRKTLAIEGLTATTVIDGQQRVLVDNLSLGVQRGRILALVGASGSGKSMTCSAALGVLPPGVTASRGRVTIDGVPYAAN ALRGRHVATIMQNPRSAFNPVRTMRDHAIETLQALGKLSSNPQDQIVHCMRAAGLEDVKTILSLHPFEMSGGMLQRMMIA LALLSEAPFLFADEPTTDLDLVVQLRVLELLEKLVEERDLGILLVTHDMGVVARLAHDVAVLDHGRLIEQAPVMDIFQTP GHEVTRMLVSAHLSLYGMELNA
Sequences:
>Translated_262_residues MTRKTLAIEGLTATTVIDGQQRVLVDNLSLGVQRGRILALVGASGSGKSMTCSAALGVLPPGVTASRGRVTIDGVPYAAN ALRGRHVATIMQNPRSAFNPVRTMRDHAIETLQALGKLSSNPQDQIVHCMRAAGLEDVKTILSLHPFEMSGGMLQRMMIA LALLSEAPFLFADEPTTDLDLVVQLRVLELLEKLVEERDLGILLVTHDMGVVARLAHDVAVLDHGRLIEQAPVMDIFQTP GHEVTRMLVSAHLSLYGMELNA >Mature_261_residues TRKTLAIEGLTATTVIDGQQRVLVDNLSLGVQRGRILALVGASGSGKSMTCSAALGVLPPGVTASRGRVTIDGVPYAANA LRGRHVATIMQNPRSAFNPVRTMRDHAIETLQALGKLSSNPQDQIVHCMRAAGLEDVKTILSLHPFEMSGGMLQRMMIAL ALLSEAPFLFADEPTTDLDLVVQLRVLELLEKLVEERDLGILLVTHDMGVVARLAHDVAVLDHGRLIEQAPVMDIFQTPG HEVTRMLVSAHLSLYGMELNA
Specific function: Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain
Homologues:
Organism=Homo sapiens, GI27436953, Length=208, Percent_Identity=26.4423076923077, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI116734710, Length=222, Percent_Identity=26.1261261261261, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI21536376, Length=211, Percent_Identity=26.5402843601896, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI105990541, Length=206, Percent_Identity=26.2135922330097, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1789890, Length=239, Percent_Identity=60.2510460251046, Blast_Score=283, Evalue=7e-78, Organism=Escherichia coli, GI1788506, Length=262, Percent_Identity=37.0229007633588, Blast_Score=158, Evalue=3e-40, Organism=Escherichia coli, GI145693107, Length=273, Percent_Identity=36.996336996337, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI1787759, Length=230, Percent_Identity=36.5217391304348, Blast_Score=134, Evalue=6e-33, Organism=Escherichia coli, GI1789963, Length=239, Percent_Identity=32.2175732217573, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI48994883, Length=233, Percent_Identity=33.9055793991416, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1787548, Length=260, Percent_Identity=30, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=33.1797235023041, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1787500, Length=248, Percent_Identity=30.241935483871, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1789962, Length=230, Percent_Identity=31.304347826087, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1787547, Length=236, Percent_Identity=27.1186440677966, Blast_Score=97, Evalue=9e-22, Organism=Escherichia coli, GI1787758, Length=227, Percent_Identity=30.3964757709251, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786398, Length=242, Percent_Identity=31.8181818181818, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI48994997, Length=234, Percent_Identity=30.7692307692308, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1789032, Length=230, Percent_Identity=26.5217391304348, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789672, Length=239, Percent_Identity=30.1255230125523, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1787712, Length=218, Percent_Identity=29.8165137614679, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786253, Length=204, Percent_Identity=29.9019607843137, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1790162, Length=234, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1786803, Length=228, Percent_Identity=27.6315789473684, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1788225, Length=235, Percent_Identity=29.3617021276596, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786345, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI87081791, Length=247, Percent_Identity=29.1497975708502, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787112, Length=220, Percent_Identity=28.1818181818182, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87081709, Length=217, Percent_Identity=23.963133640553, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786703, Length=210, Percent_Identity=33.8095238095238, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1786319, Length=203, Percent_Identity=27.0935960591133, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788450, Length=231, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI87081834, Length=223, Percent_Identity=31.390134529148, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786872, Length=205, Percent_Identity=26.8292682926829, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1787370, Length=230, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1786563, Length=212, Percent_Identity=27.3584905660377, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787029, Length=220, Percent_Identity=25, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI48994943, Length=196, Percent_Identity=28.0612244897959, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1787089, Length=251, Percent_Identity=27.8884462151394, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787143, Length=250, Percent_Identity=26.4, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1788761, Length=225, Percent_Identity=29.3333333333333, Blast_Score=62, Evalue=6e-11, Organism=Escherichia coli, GI1787105, Length=242, Percent_Identity=28.9256198347107, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=26.8518518518519, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI87081782, Length=229, Percent_Identity=24.8908296943231, Blast_Score=61, Evalue=8e-11, Organism=Escherichia coli, GI1790739, Length=248, Percent_Identity=27.8225806451613, Blast_Score=61, Evalue=9e-11, Organism=Escherichia coli, GI87082267, Length=229, Percent_Identity=25.764192139738, Blast_Score=60, Evalue=1e-10, Organism=Caenorhabditis elegans, GI115534520, Length=227, Percent_Identity=28.1938325991189, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71983516, Length=212, Percent_Identity=30.6603773584906, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71983510, Length=212, Percent_Identity=30.6603773584906, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71983523, Length=212, Percent_Identity=30.6603773584906, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI212646699, Length=216, Percent_Identity=29.1666666666667, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17543740, Length=210, Percent_Identity=29.0476190476191, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17510237, Length=208, Percent_Identity=27.8846153846154, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=226, Percent_Identity=23.8938053097345, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641565, Length=218, Percent_Identity=30.7339449541284, Blast_Score=67, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NIKD_BRUA2 (Q2YL70)
Other databases:
- EMBL: AM040265 - RefSeq: YP_418632.1 - ProteinModelPortal: Q2YL70 - SMR: Q2YL70 - STRING: Q2YL70 - GeneID: 3827146 - GenomeReviews: AM040265_GR - KEGG: bmf:BAB2_0437 - eggNOG: COG0444 - HOGENOM: HBG758042 - OMA: PARATME - ProtClustDB: PRK10418 - BioCyc: BMEL359391:BAB2_0437-MONOMER - HAMAP: MF_01711 - InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015857 - InterPro: IPR003593 - InterPro: IPR014138 - SMART: SM00382 - TIGRFAMs: TIGR02770
Pfam domain/function: PF00005 ABC_tran
EC number: =3.6.3.24
Molecular weight: Translated: 28251; Mature: 28120
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: PS00211 ABC_TRANSPORTER_1; PS50893 ABC_TRANSPORTER_2; PS51247 NIKD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRKTLAIEGLTATTVIDGQQRVLVDNLSLGVQRGRILALVGASGSGKSMTCSAALGVLP CCCCEEEECCCEEEEEECCCCEEEEEHHHHCCCCCEEEEEEECCCCCCCEEHHHHHCCCC PGVTASRGRVTIDGVPYAANALRGRHVATIMQNPRSAFNPVRTMRDHAIETLQALGKLSS CCCCCCCCEEEECCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC NPQDQIVHCMRAAGLEDVKTILSLHPFEMSGGMLQRMMIALALLSEAPFLFADEPTTDLD CCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHH LVVQLRVLELLEKLVEERDLGILLVTHDMGVVARLAHDVAVLDHGRLIEQAPVMDIFQTP HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHCC GHEVTRMLVSAHLSLYGMELNA CHHHHHHHHHHHHHHEEEEECC >Mature Secondary Structure TRKTLAIEGLTATTVIDGQQRVLVDNLSLGVQRGRILALVGASGSGKSMTCSAALGVLP CCCEEEECCCEEEEEECCCCEEEEEHHHHCCCCCEEEEEEECCCCCCCEEHHHHHCCCC PGVTASRGRVTIDGVPYAANALRGRHVATIMQNPRSAFNPVRTMRDHAIETLQALGKLSS CCCCCCCCEEEECCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC NPQDQIVHCMRAAGLEDVKTILSLHPFEMSGGMLQRMMIALALLSEAPFLFADEPTTDLD CCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHH LVVQLRVLELLEKLVEERDLGILLVTHDMGVVARLAHDVAVLDHGRLIEQAPVMDIFQTP HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHCC GHEVTRMLVSAHLSLYGMELNA CHHHHHHHHHHHHHHEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA