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The map label for this gene is dgdR [H]

Identifier: 163844894

GI number: 163844894

Start: 734410

End: 735378

Strand: Reverse

Name: dgdR [H]

Synonym: BSUIS_B0757

Alternate gene names: 163844894

Gene position: 735378-734410 (Counterclockwise)

Preceding gene: 163844900

Following gene: 163844893

Centisome position: 52.5

GC content: 61.2

Gene sequence:

>969_bases
ATGGGTGCGCCTCTCGATCTGGATCAGCTACAAACTTTCGTCGCCATTGCCGATGCGGGCAGTTTCACGCGCGCTGCGGA
TGCCGTGTTCAAGACGCAATCGGCCGTTTCCATGCAGATGCGCCGGCTGGAGGAGCGGATCGGAAAGCCGCTGTTCGATC
GCGATGGGCGGACCAACCGCTTGACCGAGGATGGTGAGAGGCTGCTGCTTTATGCCCGCCGCATGATGCATCTCAACAGC
GAGACTATTGCCGCTTTTGACGATACGCAGCTTGAAGACCATGTGCGCATCGGGACGCCTGACGATTATGCGGACAGGTT
TTTGCCGGAGATCATGGCGCGTTTTGCGCGTTCCAATCCGCGGGTTGAGCTTTCGGTGGTCTGCGAGCCGACCGTCAATC
TGGATGAGATGATCCGGCGTGGAACGCTTGATATCGCGCTCGTAACGCAATGCGACGACAAGCGACGCTCCGAGGTGGTG
CGCACAGAGCCGCTTCTCTGGGTGACATCGACCAACCATGCGGTGCATGAAGAAGCCATGCTGCCACTTGCCGTTGGACG
GCCAACCTGCATCTGGCGCCATGCGGCCATCGACGTGCTGGAGGCGGCGCGGCGGGATTATCGCATCATCATCACAAGCT
GGTCGGCGACGGTTCTGGCTGCGGCTGTGCTGTCGGGGCTTGCGGTTTCGGTTCTGCCGGAATGCGCCCTGCGCCCCGGT
ATGCGTGTGCTGGGTGAGGCCGATGGCTTCGGCATGTTGCCGGAAATCGGCATCGGCATCATGCGCGGCCATTCCAAGCA
GAATGCCGCGGTGGATGCACTTGCGCAGCATATTATCGAAAGTCTCGATAATATTTCCTCGCCGCAGCCGGGAGGCCTGG
CGGGCGCGATGAGTTCTGCCGAGATTTCGCCCTTTCCGGCGGTCCGCACGCGGCGGGTGCGCACCAATGAATTGTTGCCC
GGCTGGTGA

Upstream 100 bases:

>100_bases
TCCTTTTCCTTTACGATGATGGCGTTATCCGACAATCGAATTGATTGTTCCAACGAATGTTTTTAATGTCATCCTTCAAT
AATTATGATGGATGGCTCCA

Downstream 100 bases:

>100_bases
ACAGTGCGTAATTCGCCGCGCGGCTGCTTGACCGCCTGCGCCCACTGGTAGCCTATAACGGGATGAGCATGGCCTCCGAT
TCGAGTTTTCCCGGCGCATC

Product: hypothetical protein

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MGAPLDLDQLQTFVAIADAGSFTRAADAVFKTQSAVSMQMRRLEERIGKPLFDRDGRTNRLTEDGERLLLYARRMMHLNS
ETIAAFDDTQLEDHVRIGTPDDYADRFLPEIMARFARSNPRVELSVVCEPTVNLDEMIRRGTLDIALVTQCDDKRRSEVV
RTEPLLWVTSTNHAVHEEAMLPLAVGRPTCIWRHAAIDVLEAARRDYRIIITSWSATVLAAAVLSGLAVSVLPECALRPG
MRVLGEADGFGMLPEIGIGIMRGHSKQNAAVDALAQHIIESLDNISSPQPGGLAGAMSSAEISPFPAVRTRRVRTNELLP
GW

Sequences:

>Translated_322_residues
MGAPLDLDQLQTFVAIADAGSFTRAADAVFKTQSAVSMQMRRLEERIGKPLFDRDGRTNRLTEDGERLLLYARRMMHLNS
ETIAAFDDTQLEDHVRIGTPDDYADRFLPEIMARFARSNPRVELSVVCEPTVNLDEMIRRGTLDIALVTQCDDKRRSEVV
RTEPLLWVTSTNHAVHEEAMLPLAVGRPTCIWRHAAIDVLEAARRDYRIIITSWSATVLAAAVLSGLAVSVLPECALRPG
MRVLGEADGFGMLPEIGIGIMRGHSKQNAAVDALAQHIIESLDNISSPQPGGLAGAMSSAEISPFPAVRTRRVRTNELLP
GW
>Mature_321_residues
GAPLDLDQLQTFVAIADAGSFTRAADAVFKTQSAVSMQMRRLEERIGKPLFDRDGRTNRLTEDGERLLLYARRMMHLNSE
TIAAFDDTQLEDHVRIGTPDDYADRFLPEIMARFARSNPRVELSVVCEPTVNLDEMIRRGTLDIALVTQCDDKRRSEVVR
TEPLLWVTSTNHAVHEEAMLPLAVGRPTCIWRHAAIDVLEAARRDYRIIITSWSATVLAAAVLSGLAVSVLPECALRPGM
RVLGEADGFGMLPEIGIGIMRGHSKQNAAVDALAQHIIESLDNISSPQPGGLAGAMSSAEISPFPAVRTRRVRTNELLPG
W

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=284, Percent_Identity=32.7464788732394, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI157672245, Length=179, Percent_Identity=35.195530726257, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787806, Length=144, Percent_Identity=28.4722222222222, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790208, Length=145, Percent_Identity=33.1034482758621, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788887, Length=177, Percent_Identity=30.5084745762712, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788748, Length=186, Percent_Identity=27.9569892473118, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786401, Length=147, Percent_Identity=32.6530612244898, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790262, Length=145, Percent_Identity=28.2758620689655, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI87081904, Length=178, Percent_Identity=28.0898876404494, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787589, Length=126, Percent_Identity=34.1269841269841, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35506; Mature: 35375

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAPLDLDQLQTFVAIADAGSFTRAADAVFKTQSAVSMQMRRLEERIGKPLFDRDGRTNR
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
LTEDGERLLLYARRMMHLNSETIAAFDDTQLEDHVRIGTPDDYADRFLPEIMARFARSNP
CCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCC
RVELSVVCEPTVNLDEMIRRGTLDIALVTQCDDKRRSEVVRTEPLLWVTSTNHAVHEEAM
CEEEEEEECCCCCHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCEEEEECCCCHHHHHHC
LPLAVGRPTCIWRHAAIDVLEAARRDYRIIITSWSATVLAAAVLSGLAVSVLPECALRPG
CEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC
MRVLGEADGFGMLPEIGIGIMRGHSKQNAAVDALAQHIIESLDNISSPQPGGLAGAMSSA
HHHHCCCCCCCCCHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCC
EISPFPAVRTRRVRTNELLPGW
CCCCCCCHHHHCCHHCCCCCCC
>Mature Secondary Structure 
GAPLDLDQLQTFVAIADAGSFTRAADAVFKTQSAVSMQMRRLEERIGKPLFDRDGRTNR
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
LTEDGERLLLYARRMMHLNSETIAAFDDTQLEDHVRIGTPDDYADRFLPEIMARFARSNP
CCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCC
RVELSVVCEPTVNLDEMIRRGTLDIALVTQCDDKRRSEVVRTEPLLWVTSTNHAVHEEAM
CEEEEEEECCCCCHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCEEEEECCCCHHHHHHC
LPLAVGRPTCIWRHAAIDVLEAARRDYRIIITSWSATVLAAAVLSGLAVSVLPECALRPG
CEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC
MRVLGEADGFGMLPEIGIGIMRGHSKQNAAVDALAQHIIESLDNISSPQPGGLAGAMSSA
HHHHCCCCCCCCCHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCC
EISPFPAVRTRRVRTNELLPGW
CCCCCCCHHHHCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]