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The map label for this gene is rnk [H]

Identifier: 163844766

GI number: 163844766

Start: 600123

End: 600632

Strand: Reverse

Name: rnk [H]

Synonym: BSUIS_B0611

Alternate gene names: 163844766

Gene position: 600632-600123 (Counterclockwise)

Preceding gene: 163844769

Following gene: 163844764

Centisome position: 42.88

GC content: 59.41

Gene sequence:

>510_bases
ATGAACGGAAAGAATCGCAAGAAACCCAATATCGTCGTCAGCGAAGTCGATTATGAACGCCTGATGGGGTTGGCCAGCAA
TGCCTCTGAACGATTCGAGGAGATTGCCGAGGAGCTGATGGCCGAACTCGACCGCGCCAAGGTCGTTACGGCAAAACGCA
TTCCTGAAAACGTCGTGCAGATGGGCTCGACCGTCGAATTTCGCGCCAATGACGGGCATGAGCGCCGCGTTACGCTCGTC
TATCCAGGCGAGGCGGATATTGCCAAAAACCGCATTTCCACCCTCACGCCGATTGGCACGGCGCTGATCGGCCTTGCGCC
GGGCCAGTCCATTTCGTGGACGGCGCGTGATGGCAAGCAGCACGAACTGAATGTTCTGAAGGTGATGCGCACAGACGAGG
CTGCGGAGGAGGTGCGCGCCGAAGCGGGCAATGTCGTGGCTTTCGCAGGGCGAGATGCAGTTGGCGTCGCATCAGAGGAT
GACAATGATCCGGGCCCGAGCGCGGCCTGA

Upstream 100 bases:

>100_bases
AATCCGCTCTAACCTTTTGTTTTATCGCATTATCCGACGCAAAACCGTTTCAGATTTTTGCTGGAAATGCTCTATCTTTC
AACAGCAGTGAGCTATCGCT

Downstream 100 bases:

>100_bases
TCCACTTCATCGCCAAACCCGGTAGCAATGCCGGGTTTGGCGTTCTGGAAATGCTTTAAAGATGCTGGTTGAAGCCGCCA
GGCAAAAGCGCAACCGCTTT

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MNGKNRKKPNIVVSEVDYERLMGLASNASERFEEIAEELMAELDRAKVVTAKRIPENVVQMGSTVEFRANDGHERRVTLV
YPGEADIAKNRISTLTPIGTALIGLAPGQSISWTARDGKQHELNVLKVMRTDEAAEEVRAEAGNVVAFAGRDAVGVASED
DNDPGPSAA

Sequences:

>Translated_169_residues
MNGKNRKKPNIVVSEVDYERLMGLASNASERFEEIAEELMAELDRAKVVTAKRIPENVVQMGSTVEFRANDGHERRVTLV
YPGEADIAKNRISTLTPIGTALIGLAPGQSISWTARDGKQHELNVLKVMRTDEAAEEVRAEAGNVVAFAGRDAVGVASED
DNDPGPSAA
>Mature_169_residues
MNGKNRKKPNIVVSEVDYERLMGLASNASERFEEIAEELMAELDRAKVVTAKRIPENVVQMGSTVEFRANDGHERRVTLV
YPGEADIAKNRISTLTPIGTALIGLAPGQSISWTARDGKQHELNVLKVMRTDEAAEEVRAEAGNVVAFAGRDAVGVASED
DNDPGPSAA

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=130, Percent_Identity=37.6923076923077, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 18259; Mature: 18259

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGKNRKKPNIVVSEVDYERLMGLASNASERFEEIAEELMAELDRAKVVTAKRIPENVVQ
CCCCCCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
MGSTVEFRANDGHERRVTLVYPGEADIAKNRISTLTPIGTALIGLAPGQSISWTARDGKQ
CCCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHCHHHHHHEECCCCCCEEEEECCCCC
HELNVLKVMRTDEAAEEVRAEAGNVVAFAGRDAVGVASEDDNDPGPSAA
CHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MNGKNRKKPNIVVSEVDYERLMGLASNASERFEEIAEELMAELDRAKVVTAKRIPENVVQ
CCCCCCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
MGSTVEFRANDGHERRVTLVYPGEADIAKNRISTLTPIGTALIGLAPGQSISWTARDGKQ
CCCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHCHHHHHHEECCCCCCEEEEECCCCC
HELNVLKVMRTDEAAEEVRAEAGNVVAFAGRDAVGVASEDDNDPGPSAA
CHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]