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The map label for this gene is ybgL [C]

Identifier: 16273656

GI number: 16273656

Start: 1802362

End: 1803099

Strand: Reverse

Name: ybgL [C]

Synonym: HI1729m

Alternate gene names: 16273656

Gene position: 1803099-1802362 (Counterclockwise)

Preceding gene: 16273615

Following gene: 16273614

Centisome position: 98.52

GC content: 39.7

Gene sequence:

>738_bases
ATGAAAAAAATTGATTTAAATGCAGATATTGCAGAGGGTTTTCCTTTTGATGAAAGTTTATTGCAGTTGCTTTCTTCTGC
AAATGTTGCCTGTGGCTTACACGCTGGGGGTGCAAAGGAAATGCAAAGTGCGGTCAAATTTGCGAAAGAAAATAAGGTGC
GTATTGGTGCGCATCCTAGTTTTCCTGATCGCGAAAATTTTGGTCGTACGGCAATGGCGTTGTCTTCACAGGAATTAATC
GCACATTTGCGTTATCAATTGGGGGCATTAAAAGCGATTTGTGATGGCGAGGGGGCGGTAATTAGTTATGTTAAACCTCA
CGGTGCGTTATATAACCAAGCAGCAAAAGATGAAAAAATAGCGCGTTTAATTGCACAAACCGTTTATCAATTTGATCCGA
ATTTGAAATTAATGGGGTTAGCAGGCAGTTTAATGTTGCGCATCGCAGAGGAAGAAAAATTGCAAACGATTTCTGAAGTT
TTTGCCGATCGACATTATATGCCTGATGGGAGTTTGGTGCCTCGTTCTCAACCAAATGCAATGGTGGAATCTGATAAGGA
AGCCATTCAACAAGTGTTACAAATGGTAACAAAGGGGCAAGTCAATGCCATTGATGGAAGCCTTGTGCCTGTAAAAGCAG
AAAGTATTTGCTTACACGGCGATAATCAACATTCTTTACAATTTGCTAAACGCATTGTGGAAGAATTAGAAAAAAATCAT
ATCAAAATAACGGCATAA

Upstream 100 bases:

>100_bases
TTAGGTTCAACGATTAAATTTGAAGCGGTTAGCTTACAAGAGGCTGCTAAATTACGCCGTAAAAATGAAATATACCTTGA
TCAAATTAGGAGAATTGTTG

Downstream 100 bases:

>100_bases
GCCGAATAAACACATAACATCAACTTAACAATGGAGGTGCTTTATGGCATCAATTACTCACAGACGAAATGCGGTTTTAG
GGGCTGCTTTCTTAATGGCG

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKKIDLNADIAEGFPFDESLLQLLSSANVACGLHAGGAKEMQSAVKFAKENKVRIGAHPSFPDRENFGRTAMALSSQELI
AHLRYQLGALKAICDGEGAVISYVKPHGALYNQAAKDEKIARLIAQTVYQFDPNLKLMGLAGSLMLRIAEEEKLQTISEV
FADRHYMPDGSLVPRSQPNAMVESDKEAIQQVLQMVTKGQVNAIDGSLVPVKAESICLHGDNQHSLQFAKRIVEELEKNH
IKITA

Sequences:

>Translated_245_residues
MKKIDLNADIAEGFPFDESLLQLLSSANVACGLHAGGAKEMQSAVKFAKENKVRIGAHPSFPDRENFGRTAMALSSQELI
AHLRYQLGALKAICDGEGAVISYVKPHGALYNQAAKDEKIARLIAQTVYQFDPNLKLMGLAGSLMLRIAEEEKLQTISEV
FADRHYMPDGSLVPRSQPNAMVESDKEAIQQVLQMVTKGQVNAIDGSLVPVKAESICLHGDNQHSLQFAKRIVEELEKNH
IKITA
>Mature_245_residues
MKKIDLNADIAEGFPFDESLLQLLSSANVACGLHAGGAKEMQSAVKFAKENKVRIGAHPSFPDRENFGRTAMALSSQELI
AHLRYQLGALKAICDGEGAVISYVKPHGALYNQAAKDEKIARLIAQTVYQFDPNLKLMGLAGSLMLRIAEEEKLQTISEV
FADRHYMPDGSLVPRSQPNAMVESDKEAIQQVLQMVTKGQVNAIDGSLVPVKAESICLHGDNQHSLQFAKRIVEELEKNH
IKITA

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family

Homologues:

Organism=Escherichia coli, GI1786931, Length=243, Percent_Identity=52.2633744855967, Blast_Score=262, Evalue=2e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1729_HAEIN (P45347)

Other databases:

- EMBL:   L42023
- PIR:   H64138
- RefSeq:   NP_439870.1
- ProteinModelPortal:   P45347
- SMR:   P45347
- GeneID:   950524
- GenomeReviews:   L42023_GR
- NMPDR:   fig|71421.1.peg.1641
- TIGR:   HI_1729
- HOGENOM:   HBG482818
- OMA:   QTICLHG
- ProtClustDB:   PRK05406
- BioCyc:   HINF71421:HI_1729-MONOMER
- HAMAP:   MF_00691
- InterPro:   IPR011330
- InterPro:   IPR005501

Pfam domain/function: PF03746 LamB_YcsF; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 26822; Mature: 26822

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIDLNADIAEGFPFDESLLQLLSSANVACGLHAGGAKEMQSAVKFAKENKVRIGAHPS
CCEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCEEECCCCC
FPDRENFGRTAMALSSQELIAHLRYQLGALKAICDGEGAVISYVKPHGALYNQAAKDEKI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHH
ARLIAQTVYQFDPNLKLMGLAGSLMLRIAEEEKLQTISEVFADRHYMPDGSLVPRSQPNA
HHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
MVESDKEAIQQVLQMVTKGQVNAIDGSLVPVKAESICLHGDNQHSLQFAKRIVEELEKNH
HHHCHHHHHHHHHHHHHCCCCEECCCCEEEEECCEEEEECCCHHHHHHHHHHHHHHHHCC
IKITA
EEEEC
>Mature Secondary Structure
MKKIDLNADIAEGFPFDESLLQLLSSANVACGLHAGGAKEMQSAVKFAKENKVRIGAHPS
CCEECCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCEEECCCCC
FPDRENFGRTAMALSSQELIAHLRYQLGALKAICDGEGAVISYVKPHGALYNQAAKDEKI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHH
ARLIAQTVYQFDPNLKLMGLAGSLMLRIAEEEKLQTISEVFADRHYMPDGSLVPRSQPNA
HHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
MVESDKEAIQQVLQMVTKGQVNAIDGSLVPVKAESICLHGDNQHSLQFAKRIVEELEKNH
HHHCHHHHHHHHHHHHHCCCCEECCCCEEEEECCEEEEECCCHHHHHHHHHHHHHHHHCC
IKITA
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023