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The map label for this gene is yecS [C]

Identifier: 16273641

GI number: 16273641

Start: 1145988

End: 1146704

Strand: Reverse

Name: yecS [C]

Synonym: HI1079m

Alternate gene names: 16273641

Gene position: 1146704-1145988 (Counterclockwise)

Preceding gene: 16273008

Following gene: 30995423

Centisome position: 62.66

GC content: 35.7

Gene sequence:

>717_bases
ATGATATTACTCAATAATTGGTTGGCGAGTCTTCCATTTATGAGTGCAGAACGAGCTGAGTATGTAATCAGCTCGTTTTG
GCCTATGTTGGAAGCAGCAATTTTATACACATTGCCATTGGCAGTCATTTCCTTCTTCTGTGGTTTGCTTATTGCAGTGA
TTGTTGCAGTTATTCGTACTTTGCCTAGTCCTAATTTACCCTTAAAATTGTTACAGGCTTTATGTCGAGTGTATATCTCT
ATAATTCGAGGTACACCGATGTTAGTACAAATTTTTATTATTTTTTATGGGTTACCTGAAGTCGGTATTACTTTAGAGCC
TTTTCCGACAGCGATTATTGCATTTTCTATTAATATAGGTGCTTATGCAGCAGAAACTGTTCGTGCTTCAATTATTGCTA
TACCTAAAGGGCAGTGGGAAGCCTCTTATGCGATAGGTATGAATTATCGACAAGCATTTATTCGTACAATTATGCCACAG
GCTTTACGTATTTCAGTACCATCGCTTTCTAATACTTTTATTAGTACAGTGAAAGACACTTCATTAGCTTCTCTTGTTTT
AGTGACAGAATTATTCCGTGTCGCACAGAATATCACGGCAGCAAACTATGAATTTATTTTAATTTATAGTGAGGCAGCTT
TGATTTATTGGATTTTCTGTTTTGTTTTATCTTTCTTACAAGATCGTCTTGAAATTCGCTTATCTCGCCATTTATAA

Upstream 100 bases:

>100_bases
TTACAAGGTGAAGATGCATTGATTACAAAATTTAATCAAGTACTTGAAGCACTTCGCCAAGATGGTACATTAAAACAGAT
TTCAATTGAATGGTTTGGTT

Downstream 100 bases:

>100_bases
GGAATGTCTATGTTAAAAGTAAGTAATATTCAGAAAAACTTTAATGGCAATCATGTGTTAAAAGGCATTGATTTTGAAAT
TAATAAAGGCGAAGTGGTCG

Product: ABC-type amino acid transport system permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MILLNNWLASLPFMSAERAEYVISSFWPMLEAAILYTLPLAVISFFCGLLIAVIVAVIRTLPSPNLPLKLLQALCRVYIS
IIRGTPMLVQIFIIFYGLPEVGITLEPFPTAIIAFSINIGAYAAETVRASIIAIPKGQWEASYAIGMNYRQAFIRTIMPQ
ALRISVPSLSNTFISTVKDTSLASLVLVTELFRVAQNITAANYEFILIYSEAALIYWIFCFVLSFLQDRLEIRLSRHL

Sequences:

>Translated_238_residues
MILLNNWLASLPFMSAERAEYVISSFWPMLEAAILYTLPLAVISFFCGLLIAVIVAVIRTLPSPNLPLKLLQALCRVYIS
IIRGTPMLVQIFIIFYGLPEVGITLEPFPTAIIAFSINIGAYAAETVRASIIAIPKGQWEASYAIGMNYRQAFIRTIMPQ
ALRISVPSLSNTFISTVKDTSLASLVLVTELFRVAQNITAANYEFILIYSEAALIYWIFCFVLSFLQDRLEIRLSRHL
>Mature_238_residues
MILLNNWLASLPFMSAERAEYVISSFWPMLEAAILYTLPLAVISFFCGLLIAVIVAVIRTLPSPNLPLKLLQALCRVYIS
IIRGTPMLVQIFIIFYGLPEVGITLEPFPTAIIAFSINIGAYAAETVRASIIAIPKGQWEASYAIGMNYRQAFIRTIMPQ
ALRISVPSLSNTFISTVKDTSLASLVLVTELFRVAQNITAANYEFILIYSEAALIYWIFCFVLSFLQDRLEIRLSRHL

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=221, Percent_Identity=50.2262443438914, Blast_Score=201, Evalue=3e-53,
Organism=Escherichia coli, GI1787030, Length=222, Percent_Identity=35.1351351351351, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787086, Length=220, Percent_Identity=31.3636363636364, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787087, Length=238, Percent_Identity=27.7310924369748, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI87082239, Length=236, Percent_Identity=30.5084745762712, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1788645, Length=212, Percent_Identity=31.1320754716981, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788646, Length=228, Percent_Identity=30.2631578947368, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1786873, Length=215, Percent_Identity=29.3023255813954, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786874, Length=202, Percent_Identity=24.7524752475248, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 26662; Mature: 26662

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILLNNWLASLPFMSAERAEYVISSFWPMLEAAILYTLPLAVISFFCGLLIAVIVAVIRT
CEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPSPNLPLKLLQALCRVYISIIRGTPMLVQIFIIFYGLPEVGITLEPFPTAIIAFSINIG
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEECCC
AYAAETVRASIIAIPKGQWEASYAIGMNYRQAFIRTIMPQALRISVPSLSNTFISTVKDT
HHHHHHHHHHEEEECCCCCCCHHEECCHHHHHHHHHHCCHHHEEECCCHHHHHHHHHHHH
SLASLVLVTELFRVAQNITAANYEFILIYSEAALIYWIFCFVLSFLQDRLEIRLSRHL
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MILLNNWLASLPFMSAERAEYVISSFWPMLEAAILYTLPLAVISFFCGLLIAVIVAVIRT
CEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPSPNLPLKLLQALCRVYISIIRGTPMLVQIFIIFYGLPEVGITLEPFPTAIIAFSINIG
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEECCC
AYAAETVRASIIAIPKGQWEASYAIGMNYRQAFIRTIMPQALRISVPSLSNTFISTVKDT
HHHHHHHHHHEEEECCCCCCCHHEECCHHHHHHHHHHCCHHHEEECCCHHHHHHHHHHHH
SLASLVLVTELFRVAQNITAANYEFILIYSEAALIYWIFCFVLSFLQDRLEIRLSRHL
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]