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The map label for this gene is fliY [C]

Identifier: 16273008

GI number: 16273008

Start: 1146688

End: 1147461

Strand: Reverse

Name: fliY [C]

Synonym: HI1080

Alternate gene names: 16273008

Gene position: 1147461-1146688 (Counterclockwise)

Preceding gene: 16273009

Following gene: 16273641

Centisome position: 62.7

GC content: 36.3

Gene sequence:

>774_bases
ATGAAAAAATTACTTTTTACGACCGCACTTTTAACTGGAGCTATTGCTTTCTCAACGTTTTCTCACGCAGGCGAAATTGC
CGATCGTGTTGAAAAAACGAAAACTTTATTAGTCGGAACAGAAGGGACTTATGCACCATTTACTTTCCATGATAAAAGTG
GAAAATTAACAGGCTTTGATGTAGAGGTTATTCGTAAAGTTGCTGAAAAGCTCGGTTTGAAAGTGGAATTTAAAGAAACA
CAATGGGATGCAATGTATGCGGGGTTAAATGCAAAACGTTTTGATGTGATTGCAAACCAAACTAACCCAAGCCCAGAGCG
TTTAAAAAAATACAGTTTCACAACGCCTTATAATTATTCTGGTGGGGTGATTGTAACAAAATCATCGGATAACAGTATTA
AATCATTTGAAGACTTGAAAGGTCGTAAATCTGCGCAATCTGCAACAAGTAACTGGGGTAAAGATGCAAAAGCTGCAGGT
GCGCAGATTCTTGTAGTGGATGGTTTAGCACAGAGCTTAGAGCTTATTAAACAAGGCCGTGCAGAAGCAACAATTAATGA
TAAATTGGCTGTATTAGATTATTTTAAACAACACCCAAATTCTGGTTTAAAAATTGCTTATGATCGTGGGGATAAAACTC
CGACTGCCTTTGCTTTTTTACAAGGTGAAGATGCATTGATTACAAAATTTAATCAAGTACTTGAAGCACTTCGCCAAGAT
GGTACATTAAAACAGATTTCAATTGAATGGTTTGGTTATGATATTACTCAATAA

Upstream 100 bases:

>100_bases
TTATAACTAAAATTCATAAACCATAAATAAATAATCTTTTTTTTTCATAAGTTTGGTTTTTATAATCACGCTTAGACAAA
CACAACACAAGGAAGAAAAA

Downstream 100 bases:

>100_bases
TTGGTTGGCGAGTCTTCCATTTATGAGTGCAGAACGAGCTGAGTATGTAATCAGCTCGTTTTGGCCTATGTTGGAAGCAG
CAATTTTATACACATTGCCA

Product: amino acid ABC transporter periplasmic-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MKKLLFTTALLTGAIAFSTFSHAGEIADRVEKTKTLLVGTEGTYAPFTFHDKSGKLTGFDVEVIRKVAEKLGLKVEFKET
QWDAMYAGLNAKRFDVIANQTNPSPERLKKYSFTTPYNYSGGVIVTKSSDNSIKSFEDLKGRKSAQSATSNWGKDAKAAG
AQILVVDGLAQSLELIKQGRAEATINDKLAVLDYFKQHPNSGLKIAYDRGDKTPTAFAFLQGEDALITKFNQVLEALRQD
GTLKQISIEWFGYDITQ

Sequences:

>Translated_257_residues
MKKLLFTTALLTGAIAFSTFSHAGEIADRVEKTKTLLVGTEGTYAPFTFHDKSGKLTGFDVEVIRKVAEKLGLKVEFKET
QWDAMYAGLNAKRFDVIANQTNPSPERLKKYSFTTPYNYSGGVIVTKSSDNSIKSFEDLKGRKSAQSATSNWGKDAKAAG
AQILVVDGLAQSLELIKQGRAEATINDKLAVLDYFKQHPNSGLKIAYDRGDKTPTAFAFLQGEDALITKFNQVLEALRQD
GTLKQISIEWFGYDITQ
>Mature_257_residues
MKKLLFTTALLTGAIAFSTFSHAGEIADRVEKTKTLLVGTEGTYAPFTFHDKSGKLTGFDVEVIRKVAEKLGLKVEFKET
QWDAMYAGLNAKRFDVIANQTNPSPERLKKYSFTTPYNYSGGVIVTKSSDNSIKSFEDLKGRKSAQSATSNWGKDAKAAG
AQILVVDGLAQSLELIKQGRAEATINDKLAVLDYFKQHPNSGLKIAYDRGDKTPTAFAFLQGEDALITKFNQVLEALRQD
GTLKQISIEWFGYDITQ

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Periplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family

Homologues:

Organism=Escherichia coli, GI1788228, Length=256, Percent_Identity=35.546875, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1787085, Length=256, Percent_Identity=25, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787031, Length=254, Percent_Identity=28.3464566929134, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788649, Length=276, Percent_Identity=26.8115942028986, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787088, Length=256, Percent_Identity=26.5625, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788648, Length=233, Percent_Identity=24.4635193133047, Blast_Score=77, Evalue=8e-16,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): Y1080_HAEIN (P45024)

Other databases:

- EMBL:   L42023
- PIR:   I64181
- RefSeq:   NP_439237.1
- ProteinModelPortal:   P45024
- SMR:   P45024
- GeneID:   950096
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1080
- NMPDR:   fig|71421.1.peg.1037
- TIGR:   HI_1080
- HOGENOM:   HBG698334
- OMA:   CGGSEGG
- ProtClustDB:   CLSK808480
- BioCyc:   HINF71421:HI_1080-MONOMER
- InterPro:   IPR001638
- InterPro:   IPR018313
- SMART:   SM00062

Pfam domain/function: PF00497 SBP_bac_3

EC number: NA

Molecular weight: Translated: 28337; Mature: 28337

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLFTTALLTGAIAFSTFSHAGEIADRVEKTKTLLVGTEGTYAPFTFHDKSGKLTGFD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEECCCCCEECCC
VEVIRKVAEKLGLKVEFKETQWDAMYAGLNAKRFDVIANQTNPSPERLKKYSFTTPYNYS
HHHHHHHHHHHCCEEEECCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCC
GGVIVTKSSDNSIKSFEDLKGRKSAQSATSNWGKDAKAAGAQILVVDGLAQSLELIKQGR
CCEEEECCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHCCCEEEEECCHHHHHHHHHCCC
AEATINDKLAVLDYFKQHPNSGLKIAYDRGDKTPTAFAFLQGEDALITKFNQVLEALRQD
CCEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHCC
GTLKQISIEWFGYDITQ
CCEEEEEEEEEEEECCC
>Mature Secondary Structure
MKKLLFTTALLTGAIAFSTFSHAGEIADRVEKTKTLLVGTEGTYAPFTFHDKSGKLTGFD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEECCCCCEECCC
VEVIRKVAEKLGLKVEFKETQWDAMYAGLNAKRFDVIANQTNPSPERLKKYSFTTPYNYS
HHHHHHHHHHHCCEEEECCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCC
GGVIVTKSSDNSIKSFEDLKGRKSAQSATSNWGKDAKAAGAQILVVDGLAQSLELIKQGR
CCEEEECCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHCCCEEEEECCHHHHHHHHHCCC
AEATINDKLAVLDYFKQHPNSGLKIAYDRGDKTPTAFAFLQGEDALITKFNQVLEALRQD
CCEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHCC
GTLKQISIEWFGYDITQ
CCEEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023