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The map label for this gene is lptF

Identifier: 16273591

GI number: 16273591

Start: 1775349

End: 1776467

Strand: Reverse

Name: lptF

Synonym: HI1704

Alternate gene names: 16273591

Gene position: 1776467-1775349 (Counterclockwise)

Preceding gene: 30995471

Following gene: 16273590

Centisome position: 97.07

GC content: 36.91

Gene sequence:

>1119_bases
ATGATTTTAATTCGATATTTAATAAAAGAAGTTTTCAAAAGCCAAATCGCAATTTTACTAATTTTGCTATTGATTTTTTT
TAGTCAGCAGTTTGTGCGTGTATTAGGTGCGGCGGCAAATGGGAATGTGCCAGCTGATTTGGTTTTCTCTTTATTAGGCT
TGGGAATGCCAACAATGGCGCAGTTGATGTTGCCACTATGTTTATTTATTGCAATTTTACTGACTTTTGGTCGCCTTTAC
GCTGAAAGTGAAATCACAGTGATGCGCGCGTGCGGTGTGGGGCAACGGATTTTGGTTAAAGTGGCACTGATTATGTCTTT
ATTAACGGCAGGTATTGCCGCTTATAACGCATTATGGCTTTCGCCTTGGGCAATTCAAAAACAAGTGAATATGGTGGAAG
ATGCAAAGGCTAATCCAACCGTTGGCGTGCTGTCTTCAGGTCAGTTTATTTCTACCAATAACAATAACGTTGTGTTATTT
ATTGATAAGATTAAAGATAATCAAATCCGCAATGTTTATTTATTTCAAATGACACCTCAAAAACAAACAAAACCTTCAGT
GATAACAGCTGAAAAAGGGGAATTAATTGCGTTGCCAAATGGTGATCAAGTCTTAAATTTGAAAAATACAAAACGGGTTG
AAGGAACCTCCGCTTTGCCAGATTTTCGCATTACGCATTTTGATGAATATCACGCCTATTTAGGTTATCAATCCGCAGAA
AATACCAATGATGAAGTAGCAGAATTAACATTGTCTCAACTTATCGATTTAGATTCTTCTTCTGCGAAAGCTGAATTGCA
TTGGCGTATTACCTTAATTTTGGCAGTGCCATTAATGGCATTGATTGCTGTACCATTAAGTCGCGTAAATCCTCGACAAG
GTAGATTTGCCAAAATTTTACCCGCACTTTTACTCTATTTAATTTATTTCTTGTTACAAAGCTCTTTTAAATCTGCAGGT
TCAGCGGGAAAATTAGAGGCTGAACTCTTAATGCCGCTTGTTAATATCGGATTTTTCTTACTTGCTGTGGTGTTGAATAG
CTGGGACAGTGAAATAATGTATAAATTTCGCTATTTATTCAGTAAGAAAGGATCGGCAAAAGATGATAAATACCCTTGA

Upstream 100 bases:

>100_bases
CCTTAAATTTCTGTTTAATTCAGCGAAAATAAGTTATCATATGCGACCGATTTTATCCAGTTTTCCTCCGTTTTAGATTT
AGAAAAACAAACGAAATAAG

Downstream 100 bases:

>100_bases
TCGTTATATTGGAAAAAGTATTCTTGGCGCGATTTTTGCTACTTTAATGACTTTAGTGGGATTGTCGGCGATTATTAAAT
TTGTCGAACAATTTCGTAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQLMLPLCLFIAILLTFGRLY
AESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLSPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLF
IDKIKDNQIRNVYLFQMTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGYQSAE
NTNDEVAELTLSQLIDLDSSSAKAELHWRITLILAVPLMALIAVPLSRVNPRQGRFAKILPALLLYLIYFLLQSSFKSAG
SAGKLEAELLMPLVNIGFFLLAVVLNSWDSEIMYKFRYLFSKKGSAKDDKYP

Sequences:

>Translated_372_residues
MILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQLMLPLCLFIAILLTFGRLY
AESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLSPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLF
IDKIKDNQIRNVYLFQMTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGYQSAE
NTNDEVAELTLSQLIDLDSSSAKAELHWRITLILAVPLMALIAVPLSRVNPRQGRFAKILPALLLYLIYFLLQSSFKSAG
SAGKLEAELLMPLVNIGFFLLAVVLNSWDSEIMYKFRYLFSKKGSAKDDKYP
>Mature_372_residues
MILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQLMLPLCLFIAILLTFGRLY
AESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLSPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLF
IDKIKDNQIRNVYLFQMTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGYQSAE
NTNDEVAELTLSQLIDLDSSSAKAELHWRITLILAVPLMALIAVPLSRVNPRQGRFAKILPALLLYLIYFLLQSSFKSAG
SAGKLEAELLMPLVNIGFFLLAVVLNSWDSEIMYKFRYLFSKKGSAKDDKYP

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family

Homologues:

Organism=Escherichia coli, GI1790712, Length=365, Percent_Identity=49.3150684931507, Blast_Score=325, Evalue=2e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LPTF_HAEIN (P45333)

Other databases:

- EMBL:   L42023
- PIR:   A64176
- RefSeq:   NP_439846.1
- GeneID:   949709
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1704
- NMPDR:   fig|71421.1.peg.1617
- TIGR:   HI_1704
- HOGENOM:   HBG701345
- OMA:   EGTAMLR
- ProtClustDB:   CLSK870009
- BioCyc:   HINF71421:HI_1704-MONOMER
- GO:   GO:0006810
- InterPro:   IPR005495

Pfam domain/function: PF03739 YjgP_YjgQ

EC number: NA

Molecular weight: Translated: 41337; Mature: 41337

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc2f0ae4)-; HASH(0xd36121c)-; HASH(0xece535c)-; HASH(0xed102a4)-; HASH(0xeedcd38)-; HASH(0xf027e90)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHH
QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL
HHHHHHHHHHHHHHHHHHHHCCCCHHEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQ
CCHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCEEEEEEECCCCCCCCEEEEEEECCC
KQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGYQSAE
CCCCCCEEEECCCCEEEECCCCCEEECCCCCCCCCCCCCCCCEECCHHHHHHHHCCCCCC
NTNDEVAELTLSQLIDLDSSSAKAELHWRITLILAVPLMALIAVPLSRVNPRQGRFAKIL
CCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
PALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVLNSWDSEIMYKFRYLF
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
SKKGSAKDDKYP
HCCCCCCCCCCH
>Mature Secondary Structure
MILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHH
QLMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWL
HHHHHHHHHHHHHHHHHHHHCCCCHHEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
SPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQ
CCHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCEEEEEEECCCCCCCCEEEEEEECCC
KQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGYQSAE
CCCCCCEEEECCCCEEEECCCCCEEECCCCCCCCCCCCCCCCEECCHHHHHHHHCCCCCC
NTNDEVAELTLSQLIDLDSSSAKAELHWRITLILAVPLMALIAVPLSRVNPRQGRFAKIL
CCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
PALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVLNSWDSEIMYKFRYLF
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
SKKGSAKDDKYP
HCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800