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The map label for this gene is rnfE [H]

Identifier: 16273575

GI number: 16273575

Start: 1758396

End: 1759103

Strand: Direct

Name: rnfE [H]

Synonym: HI1688

Alternate gene names: 16273575

Gene position: 1758396-1759103 (Clockwise)

Preceding gene: 16273574

Following gene: 16273576

Centisome position: 96.08

GC content: 38.84

Gene sequence:

>708_bases
ATGACAGATTTAACTGAAAAAAATACCGCACTTGAAGAAGAAAAAATAGAAAGTGCGGTTGAAAATCAACAAAAATCCAT
CTGGAAAGAAATTTTTGCTCAAGGAATTTGGAAAAATAATCCTGCGGTTGTCCAACTTCTCGGGCTCTGTCCGCTGTTAG
CGGTGTCTAGCACCGCCACCAATGCACTTGGTTTAGGTTTAGCGACAATGCTTGTACTCACTTGCACAAATACGGTCATT
TCCCTTTTCCGTCAATATATTCCTAAGGAAATCCGTATTCCAATCTACGTAATGATCATTGCAACCACAGTAACAGCGGT
TCAACTTTTAATGAATGCTTACACTTATACGCTTTATCAATCACTGGGGATTTTTATTCCATTAATTGTGACCAACTGTA
TTATTATCGGTCGCGCAGAAGCATTCGCCTCAAAAAACAGCTTACTCCATTCCATCTGGGATGGGTTTTCAATGGGATTA
GGAATGGCACTTAGTCTAACCATACTCGGCGCATTACGTGAAATTATTGGACAAGGCACGATTTTTGAGGGCATAGAAAA
TCTATTCGGCGAACAAGCAAAATTTTTAACGCACCATATTTACCATACAGACAGTAGCTTTTTACTTTTCATTCTGCCAC
CAGGCGCATTTATAGGCTTAGGCTTGCTCCTCGCCATAAAAAATCGAATTGATAATATAAAAAAATAA

Upstream 100 bases:

>100_bases
ATTACACCTCGCGCAGTGGTTAATCAAACTAAACGATCAGCATTAATCATGCTAAATAATCAAGCCTTGTTACAACAGCT
TTCAACACAAGTGAAATAAT

Downstream 100 bases:

>100_bases
AGCAACCAAATCTTGCCTTCCCCTGCTTGCGGGGGAAGGTATCACAAAGTGACAAAAAGAGGCTCAAAGAAAATCTTGCC
TTCCCCTGCTTGCGGGGGAA

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MTDLTEKNTALEEEKIESAVENQQKSIWKEIFAQGIWKNNPAVVQLLGLCPLLAVSSTATNALGLGLATMLVLTCTNTVI
SLFRQYIPKEIRIPIYVMIIATTVTAVQLLMNAYTYTLYQSLGIFIPLIVTNCIIIGRAEAFASKNSLLHSIWDGFSMGL
GMALSLTILGALREIIGQGTIFEGIENLFGEQAKFLTHHIYHTDSSFLLFILPPGAFIGLGLLLAIKNRIDNIKK

Sequences:

>Translated_235_residues
MTDLTEKNTALEEEKIESAVENQQKSIWKEIFAQGIWKNNPAVVQLLGLCPLLAVSSTATNALGLGLATMLVLTCTNTVI
SLFRQYIPKEIRIPIYVMIIATTVTAVQLLMNAYTYTLYQSLGIFIPLIVTNCIIIGRAEAFASKNSLLHSIWDGFSMGL
GMALSLTILGALREIIGQGTIFEGIENLFGEQAKFLTHHIYHTDSSFLLFILPPGAFIGLGLLLAIKNRIDNIKK
>Mature_234_residues
TDLTEKNTALEEEKIESAVENQQKSIWKEIFAQGIWKNNPAVVQLLGLCPLLAVSSTATNALGLGLATMLVLTCTNTVIS
LFRQYIPKEIRIPIYVMIIATTVTAVQLLMNAYTYTLYQSLGIFIPLIVTNCIIIGRAEAFASKNSLLHSIWDGFSMGLG
MALSLTILGALREIIGQGTIFEGIENLFGEQAKFLTHHIYHTDSSFLLFILPPGAFIGLGLLLAIKNRIDNIKK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=207, Percent_Identity=66.1835748792271, Blast_Score=253, Evalue=9e-69,
Organism=Escherichia coli, GI1787914, Length=150, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 25846; Mature: 25715

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLTEKNTALEEEKIESAVENQQKSIWKEIFAQGIWKNNPAVVQLLGLCPLLAVSSTAT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
NALGLGLATMLVLTCTNTVISLFRQYIPKEIRIPIYVMIIATTVTAVQLLMNAYTYTLYQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLGIFIPLIVTNCIIIGRAEAFASKNSLLHSIWDGFSMGLGMALSLTILGALREIIGQGT
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
IFEGIENLFGEQAKFLTHHIYHTDSSFLLFILPPGAFIGLGLLLAIKNRIDNIKK
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TDLTEKNTALEEEKIESAVENQQKSIWKEIFAQGIWKNNPAVVQLLGLCPLLAVSSTAT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
NALGLGLATMLVLTCTNTVISLFRQYIPKEIRIPIYVMIIATTVTAVQLLMNAYTYTLYQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLGIFIPLIVTNCIIIGRAEAFASKNSLLHSIWDGFSMGLGMALSLTILGALREIIGQGT
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
IFEGIENLFGEQAKFLTHHIYHTDSSFLLFILPPGAFIGLGLLLAIKNRIDNIKK
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA