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The map label for this gene is ycbB [C]

Identifier: 16273554

GI number: 16273554

Start: 1734543

End: 1736012

Strand: Reverse

Name: ycbB [C]

Synonym: HI1667

Alternate gene names: 16273554

Gene position: 1736012-1734543 (Counterclockwise)

Preceding gene: 16273555

Following gene: 16273553

Centisome position: 94.86

GC content: 35.17

Gene sequence:

>1470_bases
ATGGTAGTGTTTAAAAGCACCTTAAAGTTATCATTATTCGCCTTATCATTATCTATGATGATGTCGGGTTGTGTTTTAGT
AGGTTTGAGCAAAAATGACCAATCTAAATCATTGTACGGCATTAATCTTTCCCATTTGTCACTCGCAGAAAGAAAAGAGC
TTGAAGAAGCCATTTATGCGGATCAGCAACGTTTAACGGAAGAAAAACAAACATTGCTTAATATGACGCTAACACACGAA
ATAGGCGATCATAAGTTACAATTTAAGCCTTTACTCGCGCGTTTATATGCTTCTCGTAAATATGCCCCGTTATGGACTGA
CAATGCGGCAGCTCGTCAATTGTTACGTGATTATGCGGCAATGGTGGCAAGCGGTATTTCAAAATCGTCGGCAACTTCAC
TAGAAACATTGGCATTGGTAGAACAACAAGGCGGATTGGTTTATGATGTGTTATTAAGTGATATTTTGTTAGATTACTTA
TATTACACACAAAATGTTCGTTCTCAAGCATCTAATTGGTTGTATTCATCTGCTCAGTATCAAGCACAACAGCCTGAAAA
TGATCATATTCAACGCTGGTTAAGTGCGGTGGAAAATAATCAACTTCTTGATTTCATACAAAGTTTAGCGGGAGAAAATC
ATTTATATCGCCAAACAATTCAATCATTGCCGATGTTTATTCCGACTTCTAAAGAATCAAATATTACTCAAAAATTGGCA
ATGAATGCACAGCGTTTACGTGTGATTCCTGATTTTCATAATGGAATTTTTGTGAATATTCCAAGCTATAAATTACAGTA
TTATCGTGATGGCGATTTAATTTTAGAATCTCGGGTAATTGTTGGCACAAATTCGCGCAGGACACCTGTAATGTATAGCA
AATTAAGTAATGTGGTTGTAAATCCACCTTGGAATGCGCCAATTCGCTTAATTAATGAAGATTTATTGCCAAAAATGAAA
GCCGATCCAAATTATATTACGGAGCATAATTATTCAATTTTAGATAATCAAGGCAATGTTGTTGATCCTGCTTCTATTGA
TTGGGAATCTATTGATAATAAATTTCCTTATCGAGTTCGACAAGCGGCTGGCGATAGTGCGTTAGGTAATTATAAATTTA
ATATGCCAAGTTCTGATGCAATTTATTTACACGATACGCCAAATCGCGGATTGTTTAATCGTAAAAATCGAGCGTTAAGT
TCTGGTTGTGTGCGTGTTGAAAAATCTGATCAATTGGCAAGTATTTTATTAAAAGAAGCAGGTTGGACAGAAACTCGAAA
AAATACAGTATTAGCAAGTAAAAAAACCACTTCTGCGCCGATACGCTCGGATAATCCTGTTTTTTTATATTATGTTACTG
CGTGGATTGAAAACGGAAATATTGTAAATTTACCTGATATTTATGGTTATGATCGTCAGATTAATCTTGCTGAGATTAAT
TGGGATCTCGTAAAAAAATATCTTCAATAA

Upstream 100 bases:

>100_bases
GAAGCAAAAACGGAAAGTAAAAAATAAATACTAAATGGTTTTGACCGCACTTTGTTTGAGAAAAGCAACAAGTGCGGTGA
TTTTAATAAAGGTTTAGGAA

Downstream 100 bases:

>100_bases
AATAAGGGAGCTATAATGAATTATGTGGATCAGAATAAACGAAAATGGTTATCGCTGGGCGGTATTGCGTTAGGAATATC
TATTTTACCAAATTCTGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MVVFKSTLKLSLFALSLSMMMSGCVLVGLSKNDQSKSLYGINLSHLSLAERKELEEAIYADQQRLTEEKQTLLNMTLTHE
IGDHKLQFKPLLARLYASRKYAPLWTDNAAARQLLRDYAAMVASGISKSSATSLETLALVEQQGGLVYDVLLSDILLDYL
YYTQNVRSQASNWLYSSAQYQAQQPENDHIQRWLSAVENNQLLDFIQSLAGENHLYRQTIQSLPMFIPTSKESNITQKLA
MNAQRLRVIPDFHNGIFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMYSKLSNVVVNPPWNAPIRLINEDLLPKMK
ADPNYITEHNYSILDNQGNVVDPASIDWESIDNKFPYRVRQAAGDSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALS
SGCVRVEKSDQLASILLKEAGWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNLPDIYGYDRQINLAEIN
WDLVKKYLQ

Sequences:

>Translated_489_residues
MVVFKSTLKLSLFALSLSMMMSGCVLVGLSKNDQSKSLYGINLSHLSLAERKELEEAIYADQQRLTEEKQTLLNMTLTHE
IGDHKLQFKPLLARLYASRKYAPLWTDNAAARQLLRDYAAMVASGISKSSATSLETLALVEQQGGLVYDVLLSDILLDYL
YYTQNVRSQASNWLYSSAQYQAQQPENDHIQRWLSAVENNQLLDFIQSLAGENHLYRQTIQSLPMFIPTSKESNITQKLA
MNAQRLRVIPDFHNGIFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMYSKLSNVVVNPPWNAPIRLINEDLLPKMK
ADPNYITEHNYSILDNQGNVVDPASIDWESIDNKFPYRVRQAAGDSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALS
SGCVRVEKSDQLASILLKEAGWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNLPDIYGYDRQINLAEIN
WDLVKKYLQ
>Mature_489_residues
MVVFKSTLKLSLFALSLSMMMSGCVLVGLSKNDQSKSLYGINLSHLSLAERKELEEAIYADQQRLTEEKQTLLNMTLTHE
IGDHKLQFKPLLARLYASRKYAPLWTDNAAARQLLRDYAAMVASGISKSSATSLETLALVEQQGGLVYDVLLSDILLDYL
YYTQNVRSQASNWLYSSAQYQAQQPENDHIQRWLSAVENNQLLDFIQSLAGENHLYRQTIQSLPMFIPTSKESNITQKLA
MNAQRLRVIPDFHNGIFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMYSKLSNVVVNPPWNAPIRLINEDLLPKMK
ADPNYITEHNYSILDNQGNVVDPASIDWESIDNKFPYRVRQAAGDSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALS
SGCVRVEKSDQLASILLKEAGWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNLPDIYGYDRQINLAEIN
WDLVKKYLQ

Specific function: Unknown

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family

Homologues:

Organism=Escherichia coli, GI1787155, Length=239, Percent_Identity=50.6276150627615, Blast_Score=239, Evalue=3e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1667_HAEIN (P44285)

Other databases:

- EMBL:   L42023
- PIR:   G64039
- RefSeq:   NP_439809.1
- ProteinModelPortal:   P44285
- GeneID:   950498
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1667
- NMPDR:   fig|71421.1.peg.1581
- TIGR:   HI_1667
- HOGENOM:   HBG296910
- OMA:   NAQRLRI
- ProtClustDB:   CLSK870031
- BioCyc:   HINF71421:HI_1667-MONOMER
- InterPro:   IPR005490

Pfam domain/function: PF03734 YkuD

EC number: NA

Molecular weight: Translated: 55583; Mature: 55583

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00092 N6_MTASE

Important sites: ACT_SITE 403-403

Signals:

None

Transmembrane regions:

HASH(0xd23ec60)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVFKSTLKLSLFALSLSMMMSGCVLVGLSKNDQSKSLYGINLSHLSLAERKELEEAIYA
CEEEECHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHH
DQQRLTEEKQTLLNMTLTHEIGDHKLQFKPLLARLYASRKYAPLWTDNAAARQLLRDYAA
HHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
MVASGISKSSATSLETLALVEQQGGLVYDVLLSDILLDYLYYTQNVRSQASNWLYSSAQY
HHHHCCCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHH
QAQQPENDHIQRWLSAVENNQLLDFIQSLAGENHLYRQTIQSLPMFIPTSKESNITQKLA
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCCHHHHHHH
MNAQRLRVIPDFHNGIFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMYSKLSNVVV
CCHHHEEEEECCCCCEEEECCCEEEEEEECCCEEEEEEEEECCCCCCCCHHHHHHCCEEE
NPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIDNKFPYRVR
CCCCCCCHHHHCHHHCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCHHHCCCCCCHHHH
QAAGDSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQLASILLKEA
HHCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCHHHHHCCEEEECCHHHHHHHHHHC
GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNLPDIYGYDRQINLAEIN
CCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCCCCEEEEEECC
WDLVKKYLQ
HHHHHHHHH
>Mature Secondary Structure
MVVFKSTLKLSLFALSLSMMMSGCVLVGLSKNDQSKSLYGINLSHLSLAERKELEEAIYA
CEEEECHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHH
DQQRLTEEKQTLLNMTLTHEIGDHKLQFKPLLARLYASRKYAPLWTDNAAARQLLRDYAA
HHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
MVASGISKSSATSLETLALVEQQGGLVYDVLLSDILLDYLYYTQNVRSQASNWLYSSAQY
HHHHCCCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHH
QAQQPENDHIQRWLSAVENNQLLDFIQSLAGENHLYRQTIQSLPMFIPTSKESNITQKLA
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCCHHHHHHH
MNAQRLRVIPDFHNGIFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMYSKLSNVVV
CCHHHEEEEECCCCCEEEECCCEEEEEEECCCEEEEEEEEECCCCCCCCHHHHHHCCEEE
NPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIDNKFPYRVR
CCCCCCCHHHHCHHHCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCHHHCCCCCCHHHH
QAAGDSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQLASILLKEA
HHCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCHHHHHCCEEEECCHHHHHHHHHHC
GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNLPDIYGYDRQINLAEIN
CCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCCCCEEEEEECC
WDLVKKYLQ
HHHHHHHHH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800