Click here to switch to the map view.

The map label for this gene is ycdY [C]

Identifier: 16273443

GI number: 16273443

Start: 1614541

End: 1615095

Strand: Reverse

Name: ycdY [C]

Synonym: HI1543

Alternate gene names: 16273443

Gene position: 1615095-1614541 (Counterclockwise)

Preceding gene: 16273444

Following gene: 16273441

Centisome position: 88.25

GC content: 36.04

Gene sequence:

>555_bases
ATGTCTGAAAAACAAATTAATAATTTTTCATTAATTAGTCGATTATTCGGTAATCTTTTTTATCGTTTTCCAACAGATAA
AGTACTCGCTGACGCATTTGTTTGGTTACAACAAGAAGGTTTGAGCCAAGTTTGGGCGTTAGATACTGATAAAGAAAGTG
AATTAGCGCTGAATAGCTTGCAAGTTAAAATCGATCTCAATTTATTGAACGAAGAGTATCAAAAATTATTTGCTACCAAT
GGTAAAGTGATGACGGCTATTTCAGCTTATGGCATTGATGTTGAAGAATTTGTGAATTTTCGCCTTGTACGCAATATGCC
AGAGGTGGAAAGTGCGGATCATTTTGCTTTATTATTGCTCACAGCCTCTTGGCTTGAAGATAATTCGGATTCTTTAGTGG
CTCAACAAGAATTCTTTGAAACTTTTTTACTGCCTTGTGCAGCGAAGTTTTTAACTCAAGTAGAAAATCAAGCAACTTTG
CCTTTTTATCGTGCATTGGCCCTTCTTACACGAGAAATATTGGCGACAATGGCGGATGAATTGGAAGAAGAGTAG

Upstream 100 bases:

>100_bases
ATATTCATTTAATTGATGATAAGGCGCGTAAAGCGATGATTGAACTTGCTGCTCAAAAAACTCAAGCAAAATTGACCGCA
CTTTTAAAGGAAAAAGAGTA

Downstream 100 bases:

>100_bases
AGCAATATTTTGCTTTTCTCTAAGTATTGAGGAAAGCAAGCAATATTTTATAGATAGGTTACAAAATCTTTTGTATCGAT
AACTCGGCATTCACGTTCTG

Product: putative component of anaerobic dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MSEKQINNFSLISRLFGNLFYRFPTDKVLADAFVWLQQEGLSQVWALDTDKESELALNSLQVKIDLNLLNEEYQKLFATN
GKVMTAISAYGIDVEEFVNFRLVRNMPEVESADHFALLLLTASWLEDNSDSLVAQQEFFETFLLPCAAKFLTQVENQATL
PFYRALALLTREILATMADELEEE

Sequences:

>Translated_184_residues
MSEKQINNFSLISRLFGNLFYRFPTDKVLADAFVWLQQEGLSQVWALDTDKESELALNSLQVKIDLNLLNEEYQKLFATN
GKVMTAISAYGIDVEEFVNFRLVRNMPEVESADHFALLLLTASWLEDNSDSLVAQQEFFETFLLPCAAKFLTQVENQATL
PFYRALALLTREILATMADELEEE
>Mature_183_residues
SEKQINNFSLISRLFGNLFYRFPTDKVLADAFVWLQQEGLSQVWALDTDKESELALNSLQVKIDLNLLNEEYQKLFATNG
KVMTAISAYGIDVEEFVNFRLVRNMPEVESADHFALLLLTASWLEDNSDSLVAQQEFFETFLLPCAAKFLTQVENQATLP
FYRALALLTREILATMADELEEE

Specific function: Unknown

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family

Homologues:

Organism=Escherichia coli, GI1787272, Length=185, Percent_Identity=37.8378378378378, Blast_Score=110, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1543_HAEIN (P44248)

Other databases:

- EMBL:   L42023
- PIR:   F64035
- RefSeq:   NP_439692.1
- ProteinModelPortal:   P44248
- SMR:   P44248
- GeneID:   950406
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1543
- NMPDR:   fig|71421.1.peg.1470
- TIGR:   HI_1543
- HOGENOM:   HBG297249
- OMA:   EVESADH
- ProtClustDB:   CLSK870286
- BioCyc:   HINF71421:HI_1543-MONOMER
- InterPro:   IPR009073
- Gene3D:   G3DSA:1.20.1280.20

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21059; Mature: 20928

Theoretical pI: Translated: 4.02; Mature: 4.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKQINNFSLISRLFGNLFYRFPTDKVLADAFVWLQQEGLSQVWALDTDKESELALNSL
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHE
QVKIDLNLLNEEYQKLFATNGKVMTAISAYGIDVEEFVNFRLVRNMPEVESADHFALLLL
EEEEEHHHHHHHHHHHHHCCCCCEEHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
TASWLEDNSDSLVAQQEFFETFLLPCAAKFLTQVENQATLPFYRALALLTREILATMADE
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LEEE
HCCC
>Mature Secondary Structure 
SEKQINNFSLISRLFGNLFYRFPTDKVLADAFVWLQQEGLSQVWALDTDKESELALNSL
CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHE
QVKIDLNLLNEEYQKLFATNGKVMTAISAYGIDVEEFVNFRLVRNMPEVESADHFALLLL
EEEEEHHHHHHHHHHHHHCCCCCEEHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
TASWLEDNSDSLVAQQEFFETFLLPCAAKFLTQVENQATLPFYRALALLTREILATMADE
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LEEE
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800