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The map label for this gene is ner

Identifier: 16273381

GI number: 16273381

Start: 1560909

End: 1561178

Strand: Direct

Name: ner

Synonym: HI1477

Alternate gene names: 16273381

Gene position: 1560909-1561178 (Clockwise)

Preceding gene: 16273371

Following gene: 16273382

Centisome position: 85.29

GC content: 39.63

Gene sequence:

>270_bases
ATGAGTGTATTAGAAAAACCAAAAAAAACCGCAGAACAGGATTGGCACCGCGCCGATATTCTTGCGGAATTAAAAAAGAA
TGGTTGGTCGCTTCGCTCTTTAGCAAAAGAGGGGCAAGTCAGCTACAACACATTAAAAACAGTTTTGGATAAATCTTATC
CAAAGATGGAGCGTTTAGTTGCAAATGCAATTGGTGTTCCACCTGAAGTTATCTGGGCTGGTCGTTTTGCTGAACGAAAT
AAAAGACCAACATTACAACATAAGTACTGA

Upstream 100 bases:

>100_bases
TATAGCCAAATGAAACTATTACGGTGTATTTTATAGTTGCAACATGCAACTATTACGGATAATATACACCACATAAGGTA
CAGCAAAAAAGGTGTATTAA

Downstream 100 bases:

>100_bases
TTTTAACCGTAAAAGTTATAAAAAGGAACATTTATGGATAATCAAAGCTTAAAAACGCACTATTCAGTGTATGAATTAGC
AAACTTAAAGCTAAAAACAC

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MSVLEKPKKTAEQDWHRADILAELKKNGWSLRSLAKEGQVSYNTLKTVLDKSYPKMERLVANAIGVPPEVIWAGRFAERN
KRPTLQHKY

Sequences:

>Translated_89_residues
MSVLEKPKKTAEQDWHRADILAELKKNGWSLRSLAKEGQVSYNTLKTVLDKSYPKMERLVANAIGVPPEVIWAGRFAERN
KRPTLQHKY
>Mature_88_residues
SVLEKPKKTAEQDWHRADILAELKKNGWSLRSLAKEGQVSYNTLKTVLDKSYPKMERLVANAIGVPPEVIWAGRFAERNK
RPTLQHKY

Specific function: Negative regulator of transcription starting from the Pe and Pc promoters of Mu. Also negatively regulates its own gene transcription

COG id: COG3423

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ner transcriptional regulatory family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NER_HAEIN (P46496)

Other databases:

- EMBL:   L42023
- RefSeq:   NP_439628.1
- ProteinModelPortal:   P46496
- SMR:   P46496
- GeneID:   950789
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1477
- NMPDR:   fig|71421.1.peg.1408
- TIGR:   HI_1477
- HOGENOM:   HBG656019
- OMA:   NTLQRRW
- ProtClustDB:   CLSK892410
- BioCyc:   HINF71421:HI_1477-MONOMER
- GO:   GO:0006350
- InterPro:   IPR010982

Pfam domain/function: SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 10262; Mature: 10131

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLEKPKKTAEQDWHRADILAELKKNGWSLRSLAKEGQVSYNTLKTVLDKSYPKMERLV
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHH
ANAIGVPPEVIWAGRFAERNKRPTLQHKY
HHHCCCCHHHHHCCCHHHCCCCCCCCCCC
>Mature Secondary Structure 
SVLEKPKKTAEQDWHRADILAELKKNGWSLRSLAKEGQVSYNTLKTVLDKSYPKMERLV
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHH
ANAIGVPPEVIWAGRFAERNKRPTLQHKY
HHHCCCCHHHHHCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800