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The map label for this gene is yddB [C]

Identifier: 16273279

GI number: 16273279

Start: 1459423

End: 1461942

Strand: Reverse

Name: yddB [C]

Synonym: HI1369

Alternate gene names: 16273279

Gene position: 1461942-1459423 (Counterclockwise)

Preceding gene: 16273280

Following gene: 16273278

Centisome position: 79.88

GC content: 33.78

Gene sequence:

>2520_bases
GTGCGGTTTTTTATTTATTTGATACCTATTTTAAGTCGAATTCCCCTTGCATTCATAAATCTTAAAAATATAATGATAAT
CATTCTTATTTGTATTTTTATTTTAGGGAACTATACTATGTATCAAAAAAAGCCATTAATGTTGTTATTCTGCTCAACAT
TTGTCAGTCCATTTGTTATGGGGAAAACTATTGAAACAACCAATAAAAATATATTGCCCGAAATTGTTGTGTATGGTGAC
AATAATAAATCGCTTTCTTCTGTTAAAACTCTTTCTTCTGATGAGATAAGTAAAACACCAACATCAAACGGTAACATCAC
TGATTATCTTCGTTCCAATCCCCATATTCGTTATGAAAATAGCGACCAAAATGGTTTTCAACGTGGTGAAATCAAGCCTG
AAAATATTTCAATTAACGGCGCCGATCCAAATCAAAGCGCCTACTTTGTTGATAATGTCAATATAAATAATGATCTTGCT
ATTGATAGCAGTATTTTTGACGGTGCTATGCAAGTTGTGCCAGGAATTAGTCACACTCAAGCTTATTTTTTTGATGCGAC
TATGCTTTCTAAAGTGGAAGTACAAGATAGTAATATTTCTGCTAGCTTAGGGGGATTTATGGGAGGGGCAGTTATCGCTA
AAACGAAACAATATAGTGGCACTGATAGCATAAAACTTAAATATCGCACGACAAATTCCTCTTGGGCAAAAATGGAAGCT
GGAGACTCAGTACAAAAAATACTGAAGTTGGTACGTCCAGATGATGTCGGAGTGGCAGAGTTACAACCTAAATACAATAA
ACAAACATTCAATATTTTGGCTGAAAAAAGGCTAAATGATAATTTAGGAATGGTTTTTGGCTATAGCCGTAGAACATCAT
CTATTGAACAAAATCGTTTAATTGGCTTTGATAAAGATGCCAATAATAAAGCACAGTTAGACAAACAAAATCATCAACGG
CTTTCCGATAATCTTTTATTAAATTTCAATTGGACACCGCAAGAAAAAGAACGAATTGAATTTGGTTTACGTTATTCAAA
TTATAAGGAATTGAAATATTTCAAGGNAAATATAAATAACAACGTAAGCGATTATCATCAAGCATTAGGAGCAACGCTTG
CTTGGGTACATTCATTCAACTCTGGCGTCTGGACAAATACCTTAGCATACGATCGTTTTCAGGATAAGCGTAAATCATCC
TCGAATAGTGTTGAAATAACATCGGTGTTAGATGAATATTATGAGCCACTTTATAATTTCGAAAAAGGCGGGTATGGCAA
TAGTCAATTAATTCAGGATAATTTGCATTTTTCAACTGAATATGTAATGGATCCTTTTTATTTAGCTTCTACGGAGCATT
CTATTTCTGTTGGTGGAATTTATCAGGCAACTAAATATCAATTCTATCGTCCACAAGATGTTCATTCAAAAATAATATTA
TCTACTTTAAAAAGTGATGGAAGTATGGAAGAACCTCCAACTTCTACAGAAAATACAACATCAAAAGGTCGTGTTAAAAC
CAGTTATCAAAATATCGCTATTTATGCTGAAGATTTAATAAAATGGAATAAATTTGAATTGCGTCCTGGCATTCGTATTG
AACGTGATGATTATTTAAAAAACAATAATATTGCTCCGCGTTTTGTTGCACGTTATCACCCTTGGGATAATACAGGATTT
ACACTAGGTTTAAATCGTTATTACGGTCGTTCTTTTGCTTCGTTAAAATTAGCGAATGGTATTTTAAAGCTCAATAATGA
TTCAACACGTCAGCATCAAAATTTTTCATCCCTAAAAAGCCCTTATGCAGATGAATTAAGTTTAAGTTTTGATCAAAATA
TGGGTAATTTCGCACTAAAACTTGGTTATATTCATCGTGATAATAAGAATCGTATCATATTGAAACGAGAGCCTATACAG
GGTGAAAGAAAAACTAGTTATATCAATGGACATCCGTTTGGTGTTGATATTTATACTTTCCAACTTAATAATATTGAACC
TTGGAAACTAGGTAAAACTTATTGGACTACGTCACTTGGTTTTGATTGGTTAAATACAAAACGAGCCGATGTAAGTAATG
AATTTAATCCAAATGAACCCGTCTATTTAGATGGAAAATTAATGACTCGTAGTCAAATGCTACAACAAGTTAATAGCAGT
ACAGAAGATTGGATTGCTCGTTTAGGTATTGATATGACGATACCAGATTACAATATCACTTGGTCTAATAAAGTGTATAT
GAAAGCCCCAATTCGTAGCTATGAGGAACTTGATGGCGATAACGGTGATGGCATTTCACGCTTCCGTAGCTATCACTATG
GCAGACATACACAATGGGACAGTAGTATCCGTTGGCAACCCACCATTCGCGGTAAACATAGCGTTTATATGCAAGTAGAT
ATTTTAAATGTGCTCAATAAAACACGTAAAAATAAAGTCACTACTATTTCCACTAGCGATGAATACGGTGTTTATACGCC
TGGGCGTGAATTTTGGCTAGAAGTTGGCTATCAATTCTAA

Upstream 100 bases:

>100_bases
GGTAAAGAAGCATACGCAATCATCAAAGCAACTTCTGTAATGGTTGGCGTAGAATAATTTCTTCCATACAAACAGAATTG
AATATAACCGCACTTTTAAA

Downstream 100 bases:

>100_bases
TATTCTTCAATGTATAGGGCTTGTGGGCTTTTGAAACATCCACTAGCCCTACTCTACGCTTATTTTTACTTAGCGTAGAG
TTTTCTTTTTTCTAGGTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 839; Mature: 839

Protein sequence:

>839_residues
MRFFIYLIPILSRIPLAFINLKNIMIIILICIFILGNYTMYQKKPLMLLFCSTFVSPFVMGKTIETTNKNILPEIVVYGD
NNKSLSSVKTLSSDEISKTPTSNGNITDYLRSNPHIRYENSDQNGFQRGEIKPENISINGADPNQSAYFVDNVNINNDLA
IDSSIFDGAMQVVPGISHTQAYFFDATMLSKVEVQDSNISASLGGFMGGAVIAKTKQYSGTDSIKLKYRTTNSSWAKMEA
GDSVQKILKLVRPDDVGVAELQPKYNKQTFNILAEKRLNDNLGMVFGYSRRTSSIEQNRLIGFDKDANNKAQLDKQNHQR
LSDNLLLNFNWTPQEKERIEFGLRYSNYKELKYFKXNINNNVSDYHQALGATLAWVHSFNSGVWTNTLAYDRFQDKRKSS
SNSVEITSVLDEYYEPLYNFEKGGYGNSQLIQDNLHFSTEYVMDPFYLASTEHSISVGGIYQATKYQFYRPQDVHSKIIL
STLKSDGSMEEPPTSTENTTSKGRVKTSYQNIAIYAEDLIKWNKFELRPGIRIERDDYLKNNNIAPRFVARYHPWDNTGF
TLGLNRYYGRSFASLKLANGILKLNNDSTRQHQNFSSLKSPYADELSLSFDQNMGNFALKLGYIHRDNKNRIILKREPIQ
GERKTSYINGHPFGVDIYTFQLNNIEPWKLGKTYWTTSLGFDWLNTKRADVSNEFNPNEPVYLDGKLMTRSQMLQQVNSS
TEDWIARLGIDMTIPDYNITWSNKVYMKAPIRSYEELDGDNGDGISRFRSYHYGRHTQWDSSIRWQPTIRGKHSVYMQVD
ILNVLNKTRKNKVTTISTSDEYGVYTPGREFWLEVGYQF

Sequences:

>Translated_839_residues
MRFFIYLIPILSRIPLAFINLKNIMIIILICIFILGNYTMYQKKPLMLLFCSTFVSPFVMGKTIETTNKNILPEIVVYGD
NNKSLSSVKTLSSDEISKTPTSNGNITDYLRSNPHIRYENSDQNGFQRGEIKPENISINGADPNQSAYFVDNVNINNDLA
IDSSIFDGAMQVVPGISHTQAYFFDATMLSKVEVQDSNISASLGGFMGGAVIAKTKQYSGTDSIKLKYRTTNSSWAKMEA
GDSVQKILKLVRPDDVGVAELQPKYNKQTFNILAEKRLNDNLGMVFGYSRRTSSIEQNRLIGFDKDANNKAQLDKQNHQR
LSDNLLLNFNWTPQEKERIEFGLRYSNYKELKYFKXNINNNVSDYHQALGATLAWVHSFNSGVWTNTLAYDRFQDKRKSS
SNSVEITSVLDEYYEPLYNFEKGGYGNSQLIQDNLHFSTEYVMDPFYLASTEHSISVGGIYQATKYQFYRPQDVHSKIIL
STLKSDGSMEEPPTSTENTTSKGRVKTSYQNIAIYAEDLIKWNKFELRPGIRIERDDYLKNNNIAPRFVARYHPWDNTGF
TLGLNRYYGRSFASLKLANGILKLNNDSTRQHQNFSSLKSPYADELSLSFDQNMGNFALKLGYIHRDNKNRIILKREPIQ
GERKTSYINGHPFGVDIYTFQLNNIEPWKLGKTYWTTSLGFDWLNTKRADVSNEFNPNEPVYLDGKLMTRSQMLQQVNSS
TEDWIARLGIDMTIPDYNITWSNKVYMKAPIRSYEELDGDNGDGISRFRSYHYGRHTQWDSSIRWQPTIRGKHSVYMQVD
ILNVLNKTRKNKVTTISTSDEYGVYTPGREFWLEVGYQF
>Mature_839_residues
MRFFIYLIPILSRIPLAFINLKNIMIIILICIFILGNYTMYQKKPLMLLFCSTFVSPFVMGKTIETTNKNILPEIVVYGD
NNKSLSSVKTLSSDEISKTPTSNGNITDYLRSNPHIRYENSDQNGFQRGEIKPENISINGADPNQSAYFVDNVNINNDLA
IDSSIFDGAMQVVPGISHTQAYFFDATMLSKVEVQDSNISASLGGFMGGAVIAKTKQYSGTDSIKLKYRTTNSSWAKMEA
GDSVQKILKLVRPDDVGVAELQPKYNKQTFNILAEKRLNDNLGMVFGYSRRTSSIEQNRLIGFDKDANNKAQLDKQNHQR
LSDNLLLNFNWTPQEKERIEFGLRYSNYKELKYFKXNINNNVSDYHQALGATLAWVHSFNSGVWTNTLAYDRFQDKRKSS
SNSVEITSVLDEYYEPLYNFEKGGYGNSQLIQDNLHFSTEYVMDPFYLASTEHSISVGGIYQATKYQFYRPQDVHSKIIL
STLKSDGSMEEPPTSTENTTSKGRVKTSYQNIAIYAEDLIKWNKFELRPGIRIERDDYLKNNNIAPRFVARYHPWDNTGF
TLGLNRYYGRSFASLKLANGILKLNNDSTRQHQNFSSLKSPYADELSLSFDQNMGNFALKLGYIHRDNKNRIILKREPIQ
GERKTSYINGHPFGVDIYTFQLNNIEPWKLGKTYWTTSLGFDWLNTKRADVSNEFNPNEPVYLDGKLMTRSQMLQQVNSS
TEDWIARLGIDMTIPDYNITWSNKVYMKAPIRSYEELDGDNGDGISRFRSYHYGRHTQWDSSIRWQPTIRGKHSVYMQVD
ILNVLNKTRKNKVTTISTSDEYGVYTPGREFWLEVGYQF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yddB

Homologues:

Organism=Escherichia coli, GI1787771, Length=823, Percent_Identity=24.0583232077764, Blast_Score=218, Evalue=9e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1369_HAEIN (P45182)

Other databases:

- EMBL:   L42023
- PIR:   F64171
- RefSeq:   NP_439520.1
- GeneID:   950892
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1369
- NMPDR:   fig|71421.1.peg.1305
- TIGR:   HI_1369
- HOGENOM:   HBG495713
- OMA:   HISWRNV
- ProtClustDB:   CLSK508911
- BioCyc:   HINF71421:HI_1369-MONOMER
- GO:   GO:0016020
- InterPro:   IPR012910
- InterPro:   IPR000531
- Gene3D:   G3DSA:2.170.130.10
- Gene3D:   G3DSA:2.40.170.20

Pfam domain/function: PF07715 Plug

EC number: NA

Molecular weight: Translated: 96358; Mature: 96358

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFFIYLIPILSRIPLAFINLKNIMIIILICIFILGNYTMYQKKPLMLLFCSTFVSPFVM
CEEEEEEHHHHHHCCEEEHHHHHHHHHHHHHHHHHCCCEEECCCCHHEEHHHHHHHHHHC
GKTIETTNKNILPEIVVYGDNNKSLSSVKTLSSDEISKTPTSNGNITDYLRSNPHIRYEN
CCEEECCCCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCEEHHHCCCCCEEEEC
SDQNGFQRGEIKPENISINGADPNQSAYFVDNVNINNDLAIDSSIFDGAMQVVPGISHTQ
CCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCEEECCHHHHHHHHHCCCCCCCC
AYFFDATMLSKVEVQDSNISASLGGFMGGAVIAKTKQYSGTDSIKLKYRTTNSSWAKMEA
EEEEEHHHHEEEEEECCCCCCHHHHHHCCEEEEECCCCCCCCEEEEEEEECCCCCEEECC
GDSVQKILKLVRPDDVGVAELQPKYNKQTFNILAEKRLNDNLGMVFGYSRRTSSIEQNRL
CHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
IGFDKDANNKAQLDKQNHQRLSDNLLLNFNWTPQEKERIEFGLRYSNYKELKYFKXNINN
EECCCCCCCCHHCCHHHHHHCCCCEEEEECCCCCHHHHHEECCCCCCCHHEEEEEECCCC
NVSDYHQALGATLAWVHSFNSGVWTNTLAYDRFQDKRKSSSNSVEITSVLDEYYEPLYNF
CHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCC
EKGGYGNSQLIQDNLHFSTEYVMDPFYLASTEHSISVGGIYQATKYQFYRPQDVHSKIIL
CCCCCCCCCEEECCCCCCHHHHCCCEEEECCCCCEEECCEEEECEEEEECCHHHHHHHHH
STLKSDGSMEEPPTSTENTTSKGRVKTSYQNIAIYAEDLIKWNKFELRPGIRIERDDYLK
HHHHCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEHHHHCCCCEEECCCCEECCCCCCC
NNNIAPRFVARYHPWDNTGFTLGLNRYYGRSFASLKLANGILKLNNDSTRQHQNFSSLKS
CCCCCCEEEEEECCCCCCCEEEECHHHHCCCHHEEEEECCEEEECCCCCHHHCCHHHHCC
PYADELSLSFDQNMGNFALKLGYIHRDNKNRIILKREPIQGERKTSYINGHPFGVDIYTF
CCCHHEEEEECCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCEECCCCCEEEEEEE
QLNNIEPWKLGKTYWTTSLGFDWLNTKRADVSNEFNPNEPVYLDGKLMTRSQMLQQVNSS
EECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCC
TEDWIARLGIDMTIPDYNITWSNKVYMKAPIRSYEELDGDNGDGISRFRSYHYGRHTQWD
HHHHHHHHCCEEECCCCEEEECCEEEEECCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCC
SSIRWQPTIRGKHSVYMQVDILNVLNKTRKNKVTTISTSDEYGVYTPGREFWLEVGYQF
CCCEECCCCCCCCEEEEEEEHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHEEECCCC
>Mature Secondary Structure
MRFFIYLIPILSRIPLAFINLKNIMIIILICIFILGNYTMYQKKPLMLLFCSTFVSPFVM
CEEEEEEHHHHHHCCEEEHHHHHHHHHHHHHHHHHCCCEEECCCCHHEEHHHHHHHHHHC
GKTIETTNKNILPEIVVYGDNNKSLSSVKTLSSDEISKTPTSNGNITDYLRSNPHIRYEN
CCEEECCCCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCEEHHHCCCCCEEEEC
SDQNGFQRGEIKPENISINGADPNQSAYFVDNVNINNDLAIDSSIFDGAMQVVPGISHTQ
CCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCEEECCHHHHHHHHHCCCCCCCC
AYFFDATMLSKVEVQDSNISASLGGFMGGAVIAKTKQYSGTDSIKLKYRTTNSSWAKMEA
EEEEEHHHHEEEEEECCCCCCHHHHHHCCEEEEECCCCCCCCEEEEEEEECCCCCEEECC
GDSVQKILKLVRPDDVGVAELQPKYNKQTFNILAEKRLNDNLGMVFGYSRRTSSIEQNRL
CHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
IGFDKDANNKAQLDKQNHQRLSDNLLLNFNWTPQEKERIEFGLRYSNYKELKYFKXNINN
EECCCCCCCCHHCCHHHHHHCCCCEEEEECCCCCHHHHHEECCCCCCCHHEEEEEECCCC
NVSDYHQALGATLAWVHSFNSGVWTNTLAYDRFQDKRKSSSNSVEITSVLDEYYEPLYNF
CHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCC
EKGGYGNSQLIQDNLHFSTEYVMDPFYLASTEHSISVGGIYQATKYQFYRPQDVHSKIIL
CCCCCCCCCEEECCCCCCHHHHCCCEEEECCCCCEEECCEEEECEEEEECCHHHHHHHHH
STLKSDGSMEEPPTSTENTTSKGRVKTSYQNIAIYAEDLIKWNKFELRPGIRIERDDYLK
HHHHCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEHHHHCCCCEEECCCCEECCCCCCC
NNNIAPRFVARYHPWDNTGFTLGLNRYYGRSFASLKLANGILKLNNDSTRQHQNFSSLKS
CCCCCCEEEEEECCCCCCCEEEECHHHHCCCHHEEEEECCEEEECCCCCHHHCCHHHHCC
PYADELSLSFDQNMGNFALKLGYIHRDNKNRIILKREPIQGERKTSYINGHPFGVDIYTF
CCCHHEEEEECCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCEECCCCCEEEEEEE
QLNNIEPWKLGKTYWTTSLGFDWLNTKRADVSNEFNPNEPVYLDGKLMTRSQMLQQVNSS
EECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCC
TEDWIARLGIDMTIPDYNITWSNKVYMKAPIRSYEELDGDNGDGISRFRSYHYGRHTQWD
HHHHHHHHCCEEECCCCEEEECCEEEEECCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCC
SSIRWQPTIRGKHSVYMQVDILNVLNKTRKNKVTTISTSDEYGVYTPGREFWLEVGYQF
CCCEECCCCCCCCEEEEEEEHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800