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The map label for this gene is cdd [H]

Identifier: 16273260

GI number: 16273260

Start: 1427001

End: 1427879

Strand: Direct

Name: cdd [H]

Synonym: HI1350

Alternate gene names: 16273260

Gene position: 1427001-1427879 (Clockwise)

Preceding gene: 16273258

Following gene: 16273263

Centisome position: 77.97

GC content: 38.34

Gene sequence:

>879_bases
ATGCAAGACCTTATTAAGCGCACCTTGCCACAAGATGATGCACTTAATCAAGCTATTGTGAATGACCTTCGTTCACAAAA
TTGGGCTGGTTTTTTAAATTATTCCCAAGTGCAGCAGCTTTGTCATAATTTTGAACTTACCACACTAAAATTGGCTATGC
ACTTGTTGCCACTTGCTGCAAGTTATAGTCATACTGCTATTTCTCATTTTAATGTGGGGGCAATTGCTATTGGCGAACAA
GGGGATTTTTATTTCGGCGCGAATCAAGAATTTGCTAATTCAGCCATTCAGCAAACGATTCACGCGGAACAAAGTGCAAT
TTCTCACGCTTGGTTGCGTAATGAACGCCGTATTTCAGATATGGTGGTCAATTACACGCCGTGCGGACATTGTCGTCAAT
TTATGAATGAATTGCACGGTGCTGAAAAAATTTCAATTCATTTGCCGCATAGCCAAAATAATCCATTACATTCTTATTTA
CCGGATGCGTTTGGACCAAAAGATCTCGATATTGCAGCGCATCTTTTGGCGGAAGAAAATCATGATTTAGTTGCTGATCA
TCAAGATGATTTGGTTAATCAAGCTATTTTAGCGGCAAATCAATCTCATTGTCCTTATTCAAATAGCCCGCACGGCATTG
CGATTTTATTTAAAAATAGCGATGTGGTGACAGGACGTTATGCAGAAAACGCCGCATTTAATCCAAGTTTGCCAGCGTTG
CAAACCGCACTTAATTTTGCGTATTTAAATGATAAAAAATTGAGTGATATTGAGCGAATTGTGATGGCTGAAAAAGCATT
AAAATTGAGCCATAAAACGATGGCTGAAACCTTATTATCCACATTAACTTCGGTAGAATTAGAGTATTATTCTTTGTAA

Upstream 100 bases:

>100_bases
ACAGTTTTAATGAATATTTAATCAAACTATCGCGGCTAACAATAAATTTTGATTTAATAAGTACAGTTATAATTTTTAAT
ATTTTTCCTAAGGATATGTT

Downstream 100 bases:

>100_bases
ATATGAAACGCGAGTAAAATAAAAAGGAAATAATTTCCTTTTTTATTTATTTGCTAAAATTACCGCTCTTTTCGGTGCTT
GATAACCTTCAATGGTTTTA

Product: cytidine deaminase

Products: NA

Alternate protein names: Cytidine aminohydrolase; CDA [H]

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MQDLIKRTLPQDDALNQAIVNDLRSQNWAGFLNYSQVQQLCHNFELTTLKLAMHLLPLAASYSHTAISHFNVGAIAIGEQ
GDFYFGANQEFANSAIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNNPLHSYL
PDAFGPKDLDIAAHLLAEENHDLVADHQDDLVNQAILAANQSHCPYSNSPHGIAILFKNSDVVTGRYAENAAFNPSLPAL
QTALNFAYLNDKKLSDIERIVMAEKALKLSHKTMAETLLSTLTSVELEYYSL

Sequences:

>Translated_292_residues
MQDLIKRTLPQDDALNQAIVNDLRSQNWAGFLNYSQVQQLCHNFELTTLKLAMHLLPLAASYSHTAISHFNVGAIAIGEQ
GDFYFGANQEFANSAIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNNPLHSYL
PDAFGPKDLDIAAHLLAEENHDLVADHQDDLVNQAILAANQSHCPYSNSPHGIAILFKNSDVVTGRYAENAAFNPSLPAL
QTALNFAYLNDKKLSDIERIVMAEKALKLSHKTMAETLLSTLTSVELEYYSL
>Mature_292_residues
MQDLIKRTLPQDDALNQAIVNDLRSQNWAGFLNYSQVQQLCHNFELTTLKLAMHLLPLAASYSHTAISHFNVGAIAIGEQ
GDFYFGANQEFANSAIQQTIHAEQSAISHAWLRNERRISDMVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNNPLHSYL
PDAFGPKDLDIAAHLLAEENHDLVADHQDDLVNQAILAANQSHCPYSNSPHGIAILFKNSDVVTGRYAENAAFNPSLPAL
QTALNFAYLNDKKLSDIERIVMAEKALKLSHKTMAETLLSTLTSVELEYYSL

Specific function: This enzyme scavenge exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis [H]

COG id: COG0295

COG function: function code F; Cytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]

Homologues:

Organism=Escherichia coli, GI1788465, Length=203, Percent_Identity=55.6650246305419, Blast_Score=223, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR013171
- InterPro:   IPR006263
- InterPro:   IPR016193
- InterPro:   IPR020797 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF08211 dCMP_cyt_deam_2 [H]

EC number: =3.5.4.5 [H]

Molecular weight: Translated: 32571; Mature: 32571

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDLIKRTLPQDDALNQAIVNDLRSQNWAGFLNYSQVQQLCHNFELTTLKLAMHLLPLAA
CHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHC
SYSHTAISHFNVGAIAIGEQGDFYFGANQEFANSAIQQTIHAEQSAISHAWLRNERRISD
CCCCHHHHCCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
MVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNNPLHSYLPDAFGPKDLDIAAHLLAEEN
HEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCC
HDLVADHQDDLVNQAILAANQSHCPYSNSPHGIAILFKNSDVVTGRYAENAAFNPSLPAL
CCEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCHHH
QTALNFAYLNDKKLSDIERIVMAEKALKLSHKTMAETLLSTLTSVELEYYSL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure
MQDLIKRTLPQDDALNQAIVNDLRSQNWAGFLNYSQVQQLCHNFELTTLKLAMHLLPLAA
CHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHC
SYSHTAISHFNVGAIAIGEQGDFYFGANQEFANSAIQQTIHAEQSAISHAWLRNERRISD
CCCCHHHHCCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
MVVNYTPCGHCRQFMNELHGAEKISIHLPHSQNNPLHSYLPDAFGPKDLDIAAHLLAEEN
HEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCC
HDLVADHQDDLVNQAILAANQSHCPYSNSPHGIAILFKNSDVVTGRYAENAAFNPSLPAL
CCEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCHHH
QTALNFAYLNDKKLSDIERIVMAEKALKLSHKTMAETLLSTLTSVELEYYSL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA