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The map label for this gene is recD

Identifier: 16273232

GI number: 16273232

Start: 1400144

End: 1402066

Strand: Direct

Name: recD

Synonym: HI1322

Alternate gene names: 16273232

Gene position: 1400144-1402066 (Clockwise)

Preceding gene: 16273231

Following gene: 16273234

Centisome position: 76.5

GC content: 38.33

Gene sequence:

>1923_bases
ATGTTATCTGTATTACACAAACTTAAAGAGCTGCGCATTCTTTCTCAAGGTGATTATTATTTTGCTAAGTTGATAGCTGA
TAAACAATGTCATACGGATTATGCGGAACCAGTCAAAAATTTAGCCATATTATTAGCCGCACTTTGTAGTTGGCGTTATA
CGCAGGGAAATACTTGCAGCCAATTAGATCGCTATTTAGAACATAATTTATTTGGCTTGGCTTATCGCACTACAGAAGAA
GATTATTTAGCTGAAATTCATGAAAAGATTGGTTATTTACCCGTTGAAGATTGGCAAAATGCGTTGTGCGGGCATATGGC
ATTTACGCAAGATCCCGTCAATCAAATTGCACCAATGGCATTTCAATTTGGCGCGTTGTATTTCTATCGCGCTTGGCAAG
ATGAATATCGCATCGTGCAATATATAAAAAATACCTTAAAAAAATACCGCACTTTAGCCTTTTCTTATGATGAAATTCAT
CAAAAATTAGAGAAATATTTCCCTGAAAAACAGGAAAAAACAGATTGGCAAAAAGTGGCAGTGGCGACAGCGATTAAAAG
TCCATTTTCGATTATTACAGGCGGCCCAGGAACAGGAAAAACCACGACAGTTACGCGTTTATTGCTCGTTCTACAAGAAT
TATTTGATTGTAAATTACACATCAAATTGGTTGCGCCGACTGGCAAGGCTGCATCTCGTTTGGAAGAGTCGATTAAAAAT
GCGTTAGGTTTTATGCAAGAAAAAATGAATGTATCCCATTCACTTTTCAATGCGATTCCACAAAAAGCCAGCACCTTGCA
TAGTTTACTGGGCGTGAATGCCTTTAATGATTACACACGATATAACAGCCATAACCCTTTGCAGTTGGATGTATTAGTTG
TTGATGAAACATCAATGATTGATTTACCAATGATGGCAAAACTTATCAATGCATTAAAGCCCGAAACTCGATTAATTTTA
TTAGGCGATCAGGCGCAATTAGCCTCTGTTGAGGCGGGGGCTGTATTGGGGGAATTGGCTCAATTTGTTACTCAACCTTA
TAGTCATGAACAAGCCGCATACTTACTAGCAACAACAGGCTACAAAGTAGAAGGTTCCGATTGTTCAAATCCAATACGTG
ATTGCTTATGCCATCTAACAGAAAGTCGCCGTTTTGATAAAGATTCAGGCATTGGCAAGTTGTCCGAATTCATTCAAAAA
GGCAAAGCAGACGATAGCCTTGAGTTATTTGACCATTATCCGCAAGAATTGCACTTTAATTCCTTAAATGATGAAGGCGA
TGCGGTCAATCAAGTGGTAAAAAGTGCGGTGGAAAATTACCGCACTTTCTTAAAAATGTTGGACGATTTACGTAAACAAA
AAATTGATCCTAACGCTAAAAATGAACAAGGCATTTCCTATGCCGAAGCTATTCAAGTGCAATTTAATTCTGTGAGATTT
TTAACCGCACTTCGTAATAACAATTTAGGTGTCGAAAATCTCAATAAAGAAATTGCGTTAGCGTTGCGAGAGCAAAAATT
GCTTTGGTTCCGTAATGAACAAGATTGGTATATCGGCAAGCCAATTATGATTACTGAAAACGATCATAACGTTCGCCTTT
ATAACGGCGATATTGGACTATGCTTGGCAAATGGCAAAGTATGGTTTGGCAATCGAGAAGTGCTGACAAACCGAATTCCA
GCGCACGAACCCGCTTTTATGATGACGATTCATAAATCTCAAGGTTCAGAATTTAAACATACCGTCATGGTGCTTCCAAC
AGAAGTAAATCCAGTATTGTCGCGAGAATTAGTTTTCACGGGTGTCACTCGTGCAAAAAAAGAACTTACTGTATTTGCTG
ATGAAAAAATATGGAAAACAGCAATTCGCCAGACCGTCAAACGCCAGAGCGGATTGGGAAAATTATTGGAAGATTTAAAT
TAG

Upstream 100 bases:

>100_bases
TTTATCTTTTCTTACGTGGAATGAACGGTGAGCCACAATCTGGCGTATTTTACGATCGTCCAAGCGTTGAATTAATCACA
GAATTAGACGGGGTGTTTTA

Downstream 100 bases:

>100_bases
TAAAAGGCGGTAAATTTGGAAGATAAATCAATCAGATAATCTCCATTTAAAATAACTTTTGGGGAAGATTATTTTAATAA
ATTCTTCAAACTGGTTTTCA

Product: exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 640; Mature: 640

Protein sequence:

>640_residues
MLSVLHKLKELRILSQGDYYFAKLIADKQCHTDYAEPVKNLAILLAALCSWRYTQGNTCSQLDRYLEHNLFGLAYRTTEE
DYLAEIHEKIGYLPVEDWQNALCGHMAFTQDPVNQIAPMAFQFGALYFYRAWQDEYRIVQYIKNTLKKYRTLAFSYDEIH
QKLEKYFPEKQEKTDWQKVAVATAIKSPFSIITGGPGTGKTTTVTRLLLVLQELFDCKLHIKLVAPTGKAASRLEESIKN
ALGFMQEKMNVSHSLFNAIPQKASTLHSLLGVNAFNDYTRYNSHNPLQLDVLVVDETSMIDLPMMAKLINALKPETRLIL
LGDQAQLASVEAGAVLGELAQFVTQPYSHEQAAYLLATTGYKVEGSDCSNPIRDCLCHLTESRRFDKDSGIGKLSEFIQK
GKADDSLELFDHYPQELHFNSLNDEGDAVNQVVKSAVENYRTFLKMLDDLRKQKIDPNAKNEQGISYAEAIQVQFNSVRF
LTALRNNNLGVENLNKEIALALREQKLLWFRNEQDWYIGKPIMITENDHNVRLYNGDIGLCLANGKVWFGNREVLTNRIP
AHEPAFMMTIHKSQGSEFKHTVMVLPTEVNPVLSRELVFTGVTRAKKELTVFADEKIWKTAIRQTVKRQSGLGKLLEDLN

Sequences:

>Translated_640_residues
MLSVLHKLKELRILSQGDYYFAKLIADKQCHTDYAEPVKNLAILLAALCSWRYTQGNTCSQLDRYLEHNLFGLAYRTTEE
DYLAEIHEKIGYLPVEDWQNALCGHMAFTQDPVNQIAPMAFQFGALYFYRAWQDEYRIVQYIKNTLKKYRTLAFSYDEIH
QKLEKYFPEKQEKTDWQKVAVATAIKSPFSIITGGPGTGKTTTVTRLLLVLQELFDCKLHIKLVAPTGKAASRLEESIKN
ALGFMQEKMNVSHSLFNAIPQKASTLHSLLGVNAFNDYTRYNSHNPLQLDVLVVDETSMIDLPMMAKLINALKPETRLIL
LGDQAQLASVEAGAVLGELAQFVTQPYSHEQAAYLLATTGYKVEGSDCSNPIRDCLCHLTESRRFDKDSGIGKLSEFIQK
GKADDSLELFDHYPQELHFNSLNDEGDAVNQVVKSAVENYRTFLKMLDDLRKQKIDPNAKNEQGISYAEAIQVQFNSVRF
LTALRNNNLGVENLNKEIALALREQKLLWFRNEQDWYIGKPIMITENDHNVRLYNGDIGLCLANGKVWFGNREVLTNRIP
AHEPAFMMTIHKSQGSEFKHTVMVLPTEVNPVLSRELVFTGVTRAKKELTVFADEKIWKTAIRQTVKRQSGLGKLLEDLN
>Mature_640_residues
MLSVLHKLKELRILSQGDYYFAKLIADKQCHTDYAEPVKNLAILLAALCSWRYTQGNTCSQLDRYLEHNLFGLAYRTTEE
DYLAEIHEKIGYLPVEDWQNALCGHMAFTQDPVNQIAPMAFQFGALYFYRAWQDEYRIVQYIKNTLKKYRTLAFSYDEIH
QKLEKYFPEKQEKTDWQKVAVATAIKSPFSIITGGPGTGKTTTVTRLLLVLQELFDCKLHIKLVAPTGKAASRLEESIKN
ALGFMQEKMNVSHSLFNAIPQKASTLHSLLGVNAFNDYTRYNSHNPLQLDVLVVDETSMIDLPMMAKLINALKPETRLIL
LGDQAQLASVEAGAVLGELAQFVTQPYSHEQAAYLLATTGYKVEGSDCSNPIRDCLCHLTESRRFDKDSGIGKLSEFIQK
GKADDSLELFDHYPQELHFNSLNDEGDAVNQVVKSAVENYRTFLKMLDDLRKQKIDPNAKNEQGISYAEAIQVQFNSVRF
LTALRNNNLGVENLNKEIALALREQKLLWFRNEQDWYIGKPIMITENDHNVRLYNGDIGLCLANGKVWFGNREVLTNRIP
AHEPAFMMTIHKSQGSEFKHTVMVLPTEVNPVLSRELVFTGVTRAKKELTVFADEKIWKTAIRQTVKRQSGLGKLLEDLN

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family

Homologues:

Organism=Escherichia coli, GI1789182, Length=642, Percent_Identity=37.6947040498442, Blast_Score=343, Evalue=2e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX5A_HAEIN (P45158)

Other databases:

- EMBL:   L42023
- PIR:   E64116
- RefSeq:   NP_439473.1
- ProteinModelPortal:   P45158
- SMR:   P45158
- GeneID:   950249
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1322
- NMPDR:   fig|71421.1.peg.1260
- TIGR:   HI_1322
- HOGENOM:   HBG482408
- OMA:   LPMMAKL
- ProtClustDB:   CLSK870142
- BioCyc:   HINF71421:HI_1322-MONOMER
- BRENDA:   3.1.11.5
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606
- TIGRFAMs:   TIGR01447

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1

EC number: =3.1.11.5

Molecular weight: Translated: 72865; Mature: 72865

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVLHKLKELRILSQGDYYFAKLIADKQCHTDYAEPVKNLAILLAALCSWRYTQGNTCS
CHHHHHHHHHHHHHCCCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH
QLDRYLEHNLFGLAYRTTEEDYLAEIHEKIGYLPVEDWQNALCGHMAFTQDPVNQIAPMA
HHHHHHHHCHHEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
FQFGALYFYRAWQDEYRIVQYIKNTLKKYRTLAFSYDEIHQKLEKYFPEKQEKTDWQKVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHH
VATAIKSPFSIITGGPGTGKTTTVTRLLLVLQELFDCKLHIKLVAPTGKAASRLEESIKN
HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHH
ALGFMQEKMNVSHSLFNAIPQKASTLHSLLGVNAFNDYTRYNSHNPLQLDVLVVDETSMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEEEEECCCCCC
DLPMMAKLINALKPETRLILLGDQAQLASVEAGAVLGELAQFVTQPYSHEQAAYLLATTG
CHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
YKVEGSDCSNPIRDCLCHLTESRRFDKDSGIGKLSEFIQKGKADDSLELFDHYPQELHFN
CEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCHHCCCC
SLNDEGDAVNQVVKSAVENYRTFLKMLDDLRKQKIDPNAKNEQGISYAEAIQVQFNSVRF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCEEE
LTALRNNNLGVENLNKEIALALREQKLLWFRNEQDWYIGKPIMITENDHNVRLYNGDIGL
EEHHHCCCCCHHHCCHHHHHHHHHHHEEEEECCCCEEECCCEEEECCCCEEEEEECCEEE
CLANGKVWFGNREVLTNRIPAHEPAFMMTIHKSQGSEFKHTVMVLPTEVNPVLSRELVFT
EEECCEEEECCHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHH
GVTRAKKELTVFADEKIWKTAIRQTVKRQSGLGKLLEDLN
HHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLSVLHKLKELRILSQGDYYFAKLIADKQCHTDYAEPVKNLAILLAALCSWRYTQGNTCS
CHHHHHHHHHHHHHCCCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH
QLDRYLEHNLFGLAYRTTEEDYLAEIHEKIGYLPVEDWQNALCGHMAFTQDPVNQIAPMA
HHHHHHHHCHHEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
FQFGALYFYRAWQDEYRIVQYIKNTLKKYRTLAFSYDEIHQKLEKYFPEKQEKTDWQKVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHH
VATAIKSPFSIITGGPGTGKTTTVTRLLLVLQELFDCKLHIKLVAPTGKAASRLEESIKN
HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHH
ALGFMQEKMNVSHSLFNAIPQKASTLHSLLGVNAFNDYTRYNSHNPLQLDVLVVDETSMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEEEEECCCCCC
DLPMMAKLINALKPETRLILLGDQAQLASVEAGAVLGELAQFVTQPYSHEQAAYLLATTG
CHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
YKVEGSDCSNPIRDCLCHLTESRRFDKDSGIGKLSEFIQKGKADDSLELFDHYPQELHFN
CEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCHHCCCC
SLNDEGDAVNQVVKSAVENYRTFLKMLDDLRKQKIDPNAKNEQGISYAEAIQVQFNSVRF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCEEE
LTALRNNNLGVENLNKEIALALREQKLLWFRNEQDWYIGKPIMITENDHNVRLYNGDIGL
EEHHHCCCCCHHHCCHHHHHHHHHHHEEEEECCCCEEECCCEEEECCCCEEEEEECCEEE
CLANGKVWFGNREVLTNRIPAHEPAFMMTIHKSQGSEFKHTVMVLPTEVNPVLSRELVFT
EEECCEEEECCHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHH
GVTRAKKELTVFADEKIWKTAIRQTVKRQSGLGKLLEDLN
HHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800