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The map label for this gene is yciO [C]

Identifier: 16273118

GI number: 16273118

Start: 1264292

End: 1264915

Strand: Direct

Name: yciO [C]

Synonym: HI1198

Alternate gene names: 16273118

Gene position: 1264292-1264915 (Clockwise)

Preceding gene: 16273117

Following gene: 16273119

Centisome position: 69.08

GC content: 39.42

Gene sequence:

>624_bases
ATGAGCCAATTTTTCTATATCCACCCTGAAAATCCACAAGCGCGCTTGATTAATCAAGCCGTAGAGATTTTACAAAAAGG
CGGTGTGATTGTGTATCCAACGGATTCGGGATATGCCTTGGGCTGTATGATGGGCGATAAACACGCAATGGATCGCATTG
TAGCAATTCGTAAATTGCCTGAAGGACATAATTTTACCTTGGTGTGTAGCGATTTGTCGGAACTTTCAACTTATGCAAGG
GTAAATAATACCGCTTATCGTTTGATTAAAAATAATACGCCAGGGCGTTATACTTTTATTCTTACAGCAACGAAAGAATT
ACCGCGTCGTTTAATGACATCAAAACGTAAAACCATTGGTTTACGCGTACCAGATAATAAAATTGCTTTAGATTTGCTTT
CAGCCTTAGGCGAGCCGATTTTATCTTGTTCGTTAATGTTGCCGAATGAAGAACATACTACGCAATCCGATCCTGAAGAA
ATTCGTGATCGTTTGGAACATCAAGTGGATTTAATTATTCATGGTGGATATTTAGGGCAAGAGCCTACAACAGTGGTAGA
TTTAACGGAAGAATCGCCAGTGATTTTACGCGAAGGAAGTGGAAGTACTGCTCCTTTTATTTAA

Upstream 100 bases:

>100_bases
GCGTAGATTGGCTTTCTACGCCTTTATTTTTATATGCTCGCCATTATAAAGTGAGCACAAAATTGCTATAATCAGCGCAC
ATTTTTTAAGGAAGAAACAC

Downstream 100 bases:

>100_bases
CTTATAGACGCTTGTGAAAGCGACCTTTCCATTATTCAAGGAAAACAATGAAACCTAGTCAAAAACAAACTCAAAGACAA
CCGCACTTTTCCAAAGATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MSQFFYIHPENPQARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELSTYAR
VNNTAYRLIKNNTPGRYTFILTATKELPRRLMTSKRKTIGLRVPDNKIALDLLSALGEPILSCSLMLPNEEHTTQSDPEE
IRDRLEHQVDLIIHGGYLGQEPTTVVDLTEESPVILREGSGSTAPFI

Sequences:

>Translated_207_residues
MSQFFYIHPENPQARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELSTYAR
VNNTAYRLIKNNTPGRYTFILTATKELPRRLMTSKRKTIGLRVPDNKIALDLLSALGEPILSCSLMLPNEEHTTQSDPEE
IRDRLEHQVDLIIHGGYLGQEPTTVVDLTEESPVILREGSGSTAPFI
>Mature_206_residues
SQFFYIHPENPQARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELSTYARV
NNTAYRLIKNNTPGRYTFILTATKELPRRLMTSKRKTIGLRVPDNKIALDLLSALGEPILSCSLMLPNEEHTTQSDPEEI
RDRLEHQVDLIIHGGYLGQEPTTVVDLTEESPVILREGSGSTAPFI

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI87081864, Length=207, Percent_Identity=73.4299516908213, Blast_Score=322, Evalue=8e-90,
Organism=Escherichia coli, GI2367210, Length=140, Percent_Identity=27.1428571428571, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1198_HAEIN (P45103)

Other databases:

- EMBL:   L42023
- PIR:   I64168
- RefSeq:   NP_439354.1
- ProteinModelPortal:   P45103
- SMR:   P45103
- GeneID:   950741
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1198
- TIGR:   HI_1198
- HOGENOM:   HBG738264
- OMA:   RYTFILT
- ProtClustDB:   CLSK870191
- BioCyc:   HINF71421:HI_1198-MONOMER
- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10
- TIGRFAMs:   TIGR00057

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 23093; Mature: 22962

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFYIHPENPQARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLP
CCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCEEEEEEECCHHHHHHHHHHHCCC
EGHNFTLVCSDLSELSTYARVNNTAYRLIKNNTPGRYTFILTATKELPRRLMTSKRKTIG
CCCCEEEEECCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECHHHHHHHHHCCCCEEE
LRVPDNKIALDLLSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGYLGQ
EECCCCHHHHHHHHHHCHHHHEEEEECCCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCC
EPTTVVDLTEESPVILREGSGSTAPFI
CCCEEEEECCCCCEEEECCCCCCCCCC
>Mature Secondary Structure 
SQFFYIHPENPQARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLP
CCEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCEEEEEEECCHHHHHHHHHHHCCC
EGHNFTLVCSDLSELSTYARVNNTAYRLIKNNTPGRYTFILTATKELPRRLMTSKRKTIG
CCCCEEEEECCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECHHHHHHHHHCCCCEEE
LRVPDNKIALDLLSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGYLGQ
EECCCCHHHHHHHHHHCHHHHEEEEECCCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCC
EPTTVVDLTEESPVILREGSGSTAPFI
CCCEEEEECCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800