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The map label for this gene is sgbU

Identifier: 16272960

GI number: 16272960

Start: 1090804

End: 1091664

Strand: Reverse

Name: sgbU

Synonym: HI1026

Alternate gene names: 16272960

Gene position: 1091664-1090804 (Counterclockwise)

Preceding gene: 16272961

Following gene: 16272959

Centisome position: 59.65

GC content: 33.33

Gene sequence:

>861_bases
ATGAAAAAACATAAAATCGGTATTTATGAGAAAGCATTACCGAAAAATATTACTTGGCAAGAGCGTTTATCTCTCGCTAA
AGCATGTGGCTTTGAATTTATTGAAATGTCTATTGATGAAAGCAATGACAGATTATCTCGTTTAAACTGGACAAAATCAG
AAAGAATAGCTCTACATCAATCTATTATTCAAAGTGGAATAACTATCCCCTCTATGTGCTTGTCGGCTCATCGTCGCTTC
CCTTTTGGTAGTAAAGACAAAAAAATTCGTCAAAAATCCTTTGAAATTATGGAAAAAGCCATTGATCTTTCGGTGAATTT
AGGCATTAGAACCATACAGTTAGCAGGTTATGATGTGTATTACGAAAAACAAGATGAAGAAACAATCAAATATTTTCAGG
AGGGTATTGAATTCGCTGTAACTCTTGCTGCATCAGCTCAAGTTACTCTTGCGGTCGAAATTATGGATACGCCTTTTATG
AGTTCTATTTCTCGTTGGAAAAAATGGGATACCATCATTAATTCTCCGTGGTTTACCGTTTACCCAGACATAGGAAATTT
AAGTGCTTGGAATAATAATATTGAAGAAGAACTTACATTAGGCATAGATAAAATATCAGCTATTCATTTAAAAGATACTT
ACCCCGTCACTGAAACAAGTAAAGGACAATTTAGAGATGTACCTTTTGGTCAAGGATGTGTTGATTTTGTTCATTTTTTT
AGCCTATTAAAAAAATTGAATTACAGAGGTGCATTCTTAATTGAAATGTGGACAGAAAAAAATGAAGAACCCTTATTAGA
AATTATTCAAGCTCGTAAGTGGATAGTTCAACAAATGGAAAAGGCAGGATTATTATGTTAG

Upstream 100 bases:

>100_bases
TTACCTGATAAAAATCAATATAGTAAGTATCAGCATAAATATCATCGCTATTTAAAGTTTATTGAAGCATTAAAAAATTT
AGACTAAAAAAGGAAAAGTT

Downstream 100 bases:

>100_bases
CACAATTAAAAAAAGAGGTTTTTGAAGCCAATTTAGCATTACCCAAACATCATTTAGTGACTTTTACTTGGGGTAATGTT
TCAGCAATTGATCGTGAAAA

Product: putative L-xylulose 5-phosphate 3-epimerase

Products: NA

Alternate protein names: HUMPI

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKKHKIGIYEKALPKNITWQERLSLAKACGFEFIEMSIDESNDRLSRLNWTKSERIALHQSIIQSGITIPSMCLSAHRRF
PFGSKDKKIRQKSFEIMEKAIDLSVNLGIRTIQLAGYDVYYEKQDEETIKYFQEGIEFAVTLAASAQVTLAVEIMDTPFM
SSISRWKKWDTIINSPWFTVYPDIGNLSAWNNNIEEELTLGIDKISAIHLKDTYPVTETSKGQFRDVPFGQGCVDFVHFF
SLLKKLNYRGAFLIEMWTEKNEEPLLEIIQARKWIVQQMEKAGLLC

Sequences:

>Translated_286_residues
MKKHKIGIYEKALPKNITWQERLSLAKACGFEFIEMSIDESNDRLSRLNWTKSERIALHQSIIQSGITIPSMCLSAHRRF
PFGSKDKKIRQKSFEIMEKAIDLSVNLGIRTIQLAGYDVYYEKQDEETIKYFQEGIEFAVTLAASAQVTLAVEIMDTPFM
SSISRWKKWDTIINSPWFTVYPDIGNLSAWNNNIEEELTLGIDKISAIHLKDTYPVTETSKGQFRDVPFGQGCVDFVHFF
SLLKKLNYRGAFLIEMWTEKNEEPLLEIIQARKWIVQQMEKAGLLC
>Mature_286_residues
MKKHKIGIYEKALPKNITWQERLSLAKACGFEFIEMSIDESNDRLSRLNWTKSERIALHQSIIQSGITIPSMCLSAHRRF
PFGSKDKKIRQKSFEIMEKAIDLSVNLGIRTIQLAGYDVYYEKQDEETIKYFQEGIEFAVTLAASAQVTLAVEIMDTPFM
SSISRWKKWDTIINSPWFTVYPDIGNLSAWNNNIEEELTLGIDKISAIHLKDTYPVTETSKGQFRDVPFGQGCVDFVHFF
SLLKKLNYRGAFLIEMWTEKNEEPLLEIIQARKWIVQQMEKAGLLC

Specific function: Isomerization of D-arabino-6-hexulose 3-phosphate to D- fructose 6-phosphate

COG id: COG3623

COG function: function code G; Putative L-xylulose-5-phosphate 3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HUMPI family

Homologues:

Organism=Escherichia coli, GI87082294, Length=286, Percent_Identity=65.7342657342657, Blast_Score=422, Evalue=1e-120,
Organism=Escherichia coli, GI1790641, Length=284, Percent_Identity=53.169014084507, Blast_Score=334, Evalue=4e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SGBU_HAEIN (P44990)

Other databases:

- EMBL:   L42023
- PIR:   G64164
- RefSeq:   NP_439186.1
- ProteinModelPortal:   P44990
- GeneID:   950012
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1026
- NMPDR:   fig|71421.1.peg.988
- TIGR:   HI_1026
- HOGENOM:   HBG296694
- OMA:   AFLIEMW
- ProtClustDB:   PRK13210
- BioCyc:   HINF71421:HI_1026-MONOMER
- InterPro:   IPR004560
- InterPro:   IPR013022
- InterPro:   IPR012307
- Gene3D:   G3DSA:3.20.20.150
- TIGRFAMs:   TIGR00542

Pfam domain/function: PF01261 AP_endonuc_2; SSF51658 Xyl_isomerase-like_TIM-brl

EC number: 5.-.-.-

Molecular weight: Translated: 33063; Mature: 33063

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHKIGIYEKALPKNITWQERLSLAKACGFEFIEMSIDESNDRLSRLNWTKSERIALHQ
CCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCHHHHHHHH
SIIQSGITIPSMCLSAHRRFPFGSKDKKIRQKSFEIMEKAIDLSVNLGIRTIQLAGYDVY
HHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEECCEEEEEEECEEEE
YEKQDEETIKYFQEGIEFAVTLAASAQVTLAVEIMDTPFMSSISRWKKWDTIINSPWFTV
EECCCHHHHHHHHHHHHEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
YPDIGNLSAWNNNIEEELTLGIDKISAIHLKDTYPVTETSKGQFRDVPFGQGCVDFVHFF
CCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
SLLKKLNYRGAFLIEMWTEKNEEPLLEIIQARKWIVQQMEKAGLLC
HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKHKIGIYEKALPKNITWQERLSLAKACGFEFIEMSIDESNDRLSRLNWTKSERIALHQ
CCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCHHHHHHHH
SIIQSGITIPSMCLSAHRRFPFGSKDKKIRQKSFEIMEKAIDLSVNLGIRTIQLAGYDVY
HHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEECCEEEEEEECEEEE
YEKQDEETIKYFQEGIEFAVTLAASAQVTLAVEIMDTPFMSSISRWKKWDTIINSPWFTV
EECCCHHHHHHHHHHHHEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
YPDIGNLSAWNNNIEEELTLGIDKISAIHLKDTYPVTETSKGQFRDVPFGQGCVDFVHFF
CCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
SLLKKLNYRGAFLIEMWTEKNEEPLLEIIQARKWIVQQMEKAGLLC
HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800