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The map label for this gene is glpR [C]

Identifier: 16272944

GI number: 16272944

Start: 1073504

End: 1074274

Strand: Reverse

Name: glpR [C]

Synonym: HI1009

Alternate gene names: 16272944

Gene position: 1074274-1073504 (Counterclockwise)

Preceding gene: 16272957

Following gene: 16272933

Centisome position: 58.7

GC content: 34.76

Gene sequence:

>771_bases
ATGGAGAAAAAGATGATTCCTGCTGAACGGCAAAAGACATTATTAAACTTAATTAGTAAACAAAGCGTTATTAGTATAAA
TAACTTAGTCAATATCTTAGGCGTATCGCATATGACCGTACGTCGTGATATACAAAAGCTCGAAGAGGATGGAAAAGTCA
TCTCTGTTTCGGGGGGGGTTCAATTACTTGAACGTTTATCCAGTGAACCAACACATGACGATAAATCATTACTAGCAACG
ACTGAAAAGACGGCTATTAGTAAAAAAGCAGTTGAGTTAATACAAGAACATTCCACTATATATCTAGATGCTGGCACGAC
AACACTTGAAATCGCAAAACAAATCGCTAATCGAAACGATCTACTTGTAATTACTAATGATTTTGTTATTGCCCATTATT
TAATGGTCAATAGCCAATGTAATATTATGCATACTGGTGGGCTCATTAATAAATCAAATCGTTCCTCTGTGGGAGAATTT
GCTGCCCAATTTCTACATCAAATTTCAGTTGACATTGCGTTCATCTCGACTTCATCTTGGAATTTAAAAGGGCTAACCAC
GCCTGATGAGCAAAAAATTCCTGTCAAAAAAGCTATTATCCAATTTAGTCAAAAAAATATCCTTGTTACTGATTCATCCA
AATATGGCAAAGTAGCAACATTTCTACTATATCCACTTAGTTCACTAGATACGATTATCTGTGATAAAGGATTACCCGAA
AATGCTCAAGCTAGAATCGCTGAAATGAATGTTGAATTATTTTTAGTATAA

Upstream 100 bases:

>100_bases
TTAAATCTGAGATCTAGATCACAGAATGATAAAAAATGTTATTTTTTGTTAATTTTAGTGATAAAACGTTATGAGCTCAT
AATCTGATTTGAAATCAGGT

Downstream 100 bases:

>100_bases
AATAAAAAAGGCCCTGTGAAACAGGGCATTCATTGGAGGTTAAAAAATTAAAAGATTATACGATCACGATTTTTCTCTAG
TGTTGCTTTGCCAATTCCTT

Product: glycerol-3-phosphate regulon repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MEKKMIPAERQKTLLNLISKQSVISINNLVNILGVSHMTVRRDIQKLEEDGKVISVSGGVQLLERLSSEPTHDDKSLLAT
TEKTAISKKAVELIQEHSTIYLDAGTTTLEIAKQIANRNDLLVITNDFVIAHYLMVNSQCNIMHTGGLINKSNRSSVGEF
AAQFLHQISVDIAFISTSSWNLKGLTTPDEQKIPVKKAIIQFSQKNILVTDSSKYGKVATFLLYPLSSLDTIICDKGLPE
NAQARIAEMNVELFLV

Sequences:

>Translated_256_residues
MEKKMIPAERQKTLLNLISKQSVISINNLVNILGVSHMTVRRDIQKLEEDGKVISVSGGVQLLERLSSEPTHDDKSLLAT
TEKTAISKKAVELIQEHSTIYLDAGTTTLEIAKQIANRNDLLVITNDFVIAHYLMVNSQCNIMHTGGLINKSNRSSVGEF
AAQFLHQISVDIAFISTSSWNLKGLTTPDEQKIPVKKAIIQFSQKNILVTDSSKYGKVATFLLYPLSSLDTIICDKGLPE
NAQARIAEMNVELFLV
>Mature_256_residues
MEKKMIPAERQKTLLNLISKQSVISINNLVNILGVSHMTVRRDIQKLEEDGKVISVSGGVQLLERLSSEPTHDDKSLLAT
TEKTAISKKAVELIQEHSTIYLDAGTTTLEIAKQIANRNDLLVITNDFVIAHYLMVNSQCNIMHTGGLINKSNRSSVGEF
AAQFLHQISVDIAFISTSSWNLKGLTTPDEQKIPVKKAIIQFSQKNILVTDSSKYGKVATFLLYPLSSLDTIICDKGLPE
NAQARIAEMNVELFLV

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI226510968, Length=251, Percent_Identity=50.199203187251, Blast_Score=268, Evalue=2e-73,
Organism=Escherichia coli, GI1789519, Length=252, Percent_Identity=30.5555555555556, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1789829, Length=252, Percent_Identity=29.3650793650794, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1789059, Length=252, Percent_Identity=29.3650793650794, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87082344, Length=249, Percent_Identity=30.1204819277108, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1790753, Length=256, Percent_Identity=32.03125, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788069, Length=251, Percent_Identity=27.0916334661355, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787540, Length=228, Percent_Identity=27.1929824561404, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787063, Length=241, Percent_Identity=28.2157676348548, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790635, Length=248, Percent_Identity=24.5967741935484, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789170, Length=236, Percent_Identity=25, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): Y1009_HAEIN (P44978)

Other databases:

- EMBL:   L42023
- PIR:   A64108
- RefSeq:   NP_439170.1
- ProteinModelPortal:   P44978
- GeneID:   950712
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1009
- NMPDR:   fig|71421.1.peg.973
- TIGR:   HI_1009
- HOGENOM:   HBG694151
- OMA:   DFVIAHF
- ProtClustDB:   CLSK870468
- BioCyc:   HINF71421:HI_1009-MONOMER
- GO:   GO:0005622
- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00037
- SMART:   SM00420

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR

EC number: NA

Molecular weight: Translated: 28321; Mature: 28321

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS00894 HTH_DEOR_1; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKMIPAERQKTLLNLISKQSVISINNLVNILGVSHMTVRRDIQKLEEDGKVISVSGGV
CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCH
QLLERLSSEPTHDDKSLLATTEKTAISKKAVELIQEHSTIYLDAGTTTLEIAKQIANRND
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCC
LLVITNDFVIAHYLMVNSQCNIMHTGGLINKSNRSSVGEFAAQFLHQISVDIAFISTSSW
EEEEECCHHEEHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEEECCC
NLKGLTTPDEQKIPVKKAIIQFSQKNILVTDSSKYGKVATFLLYPLSSLDTIICDKGLPE
CCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHEEECCCCCC
NAQARIAEMNVELFLV
CHHHEEEEECEEEEEC
>Mature Secondary Structure
MEKKMIPAERQKTLLNLISKQSVISINNLVNILGVSHMTVRRDIQKLEEDGKVISVSGGV
CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCH
QLLERLSSEPTHDDKSLLATTEKTAISKKAVELIQEHSTIYLDAGTTTLEIAKQIANRND
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCC
LLVITNDFVIAHYLMVNSQCNIMHTGGLINKSNRSSVGEFAAQFLHQISVDIAFISTSSW
EEEEECCHHEEHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEEECCC
NLKGLTTPDEQKIPVKKAIIQFSQKNILVTDSSKYGKVATFLLYPLSSLDTIICDKGLPE
CCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHEEECCCCCC
NAQARIAEMNVELFLV
CHHHEEEEECEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800