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The map label for this gene is speF

Identifier: 16272535

GI number: 16272535

Start: 612624

End: 614786

Strand: Reverse

Name: speF

Synonym: HI0591

Alternate gene names: 16272535

Gene position: 614786-612624 (Counterclockwise)

Preceding gene: 16272537

Following gene: 16272534

Centisome position: 33.59

GC content: 36.8

Gene sequence:

>2163_bases
ATGCCAAATTTAAAAATTGCATATAGTCCAAAAGTTGAACAATATTTCTCTACAAATAGAGAATTAGTTGAGATTGCTAA
AACAGACTTTACAGATGTTGCAGCTATCGTATTAAGTTCAAGTGATGTAGGTGAATACCTCGATAGAATTAAAGCAACGA
AATTTGATGTTCCAGTGTTTATTGTTCAAACCGACGAACAACAGGTGGATCCAAAATTCTATGATTCTATTTACCATATC
CAAGATTTAAACGGTTATGACATCAAACTTTATAGCCGCCAAATCGAAACTGCAGCAAAACTTTATGAAGAAAAAATGTT
ACCGCCATTCTTCAAAATGTTAAGTGAATATGTGGAAATGGGTAATATCGCTTTCGACTGTCCGGGACATCAAGGTGGTC
AATACTATCGTAAACATCCAGCTGGTCGTTTCCTTTATGACTTCTACGGTGAAAACATTTTCCGTTCGGACATTTGTAAT
GCGGACGTGAAATTAGGTGACTTGTTAATTCACGAAGGGGCAGCTTGTGATGCACAAAAATATGCGGCTCAAGTATTCAA
TGCAGATAAAACTTACTTCGTATTGAATGGTACATCTTCTTCAAACAAAGTTGCGTTAAATGCTGTACTTGCTCCTGGCG
ATTTAGTGTTATTTGATCGTAATAACCATAAATCAAACCACCATGGTGCATTAATTCAAGCGGGTGCTACCCCAATTTAC
TTAGAAACTGCACGTAACCCATTTGGTTTCATTGGTGGTATTGATAGTCACTGCTTCGAAGAAGATTATCTGAAATCATT
AATTAAAGAAGTTGCACCTGAAAAATTAAACCAAAAACGTCCATTCCGTTTGGCAGTGATTCAATTAGGTACTTATGACG
GTACAATTTATAACGCACGCCAAGTAGTGGATAAAATAGGTCACCTTTGTGATTACATCTTATTCGACTCTGCATGGGTA
GGTTATGAACAATTCATTCCAATGATGAAAGACTGCTCGCCATTATTGCTTGAATTAAATGAAAATGACCCAGGTATTTT
AGTGACACAATCTGTTCATAAACAACAAGCAGGTTTCTCACAAACTTCACAAATTCACAAAAAAGATAAACACATTAAAG
GTCAAGATCGTTATGTAAATCACAAACGTTTCAATAATGCCTTTATGTTACATGCGTCAACTAGTCCGTTCTATCCGTTA
TTTGCTACGTTAGATGTGAATGCGAAAATTCAAGGTAGTGAAGCTGGTCGTCGATTATGGCATGAATGTGTGAAAGTAGG
TATCGAAGCGCGTAAATTAGTGTTAAACCACTGTGAATTAATTCGTCCATTTATTCCAACCACAATTAAAGGTAAAAAAT
GGCAAGATTATGACACAGAGGAAATCGCAACTAATCTCGAGTTCTTCAAATTCCACCCAACAGATACATGGCATAAATTT
GAAGGTTATGCTGATGAACAATACTTCGTTGATCCATGTAAATTCTTGCTTACCACACCGGGTATTAGCTTAGAAACAGG
TGAATATGAAGAATTTGGTGTACCAGCAACCATTCTTGCTAACTACTTACGTGAAAACGGTATTATTCCGGAAAAATGTG
ACTTGAACTCAATCTTATTCTTGCTCACTCCAGCAGAAACCATCACCAAAATGCAAACTTTAGTTGCTCAAATCGCCTTG
TTTGAAAAACACATTAAACAAGACTCTTTATTAAAATATGTCTTACCAACTGTGTATAAAAACAATGAAGATCGTTACAA
AGGTTACACCATTCGTCAATTATGCCAAGAAATGCATGATCTTTATGTAAGCCGAAATGTAAAACAACTTCAAAAAGATT
TGTTCCGCAAAGCGACATTACCAGAATATGTATTAAATCCACATGATGCAAATATTGAGTTAATACGTAACAAAGTTGAA
CTCGTTCCGTTGACTGATATTGTTGGTCGTGTGGCTGCGGAAGGTGCGTTACCTTACCCTCCAGGTGTGTTATGTGTAGT
GCCAGGAGAAAAATGGAGCACTACAGCACACCAATATTTCCTTGCGTTAGAAGAAGGGATCAACACATTACCTGGTTTCG
CACCTGAAATCCAAGGGGTTTACTTACAAAAAGACCCTGATGGACGTACTCGTGCATATGGCTATGTTTTAACTGACTAT
TAA

Upstream 100 bases:

>100_bases
AAAACTAGATCGTGTTATTTTATTCTAAATAAATCTATTGCGTTATTAAAATTAATAATGCTGGGTAACTTTACGTCAAA
AATAAATAAAGGAGTTTATT

Downstream 100 bases:

>100_bases
TAAAGTGAGGTTGTGAGGATCTTCTTCATAACTCTCTCAACACAAACAAAAAAGTGCGGTTAAAAATATCTGATTTTTTG
ACCGCACTTGTAGGAGTATA

Product: ornithine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 720; Mature: 719

Protein sequence:

>720_residues
MPNLKIAYSPKVEQYFSTNRELVEIAKTDFTDVAAIVLSSSDVGEYLDRIKATKFDVPVFIVQTDEQQVDPKFYDSIYHI
QDLNGYDIKLYSRQIETAAKLYEEKMLPPFFKMLSEYVEMGNIAFDCPGHQGGQYYRKHPAGRFLYDFYGENIFRSDICN
ADVKLGDLLIHEGAACDAQKYAAQVFNADKTYFVLNGTSSSNKVALNAVLAPGDLVLFDRNNHKSNHHGALIQAGATPIY
LETARNPFGFIGGIDSHCFEEDYLKSLIKEVAPEKLNQKRPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWV
GYEQFIPMMKDCSPLLLELNENDPGILVTQSVHKQQAGFSQTSQIHKKDKHIKGQDRYVNHKRFNNAFMLHASTSPFYPL
FATLDVNAKIQGSEAGRRLWHECVKVGIEARKLVLNHCELIRPFIPTTIKGKKWQDYDTEEIATNLEFFKFHPTDTWHKF
EGYADEQYFVDPCKFLLTTPGISLETGEYEEFGVPATILANYLRENGIIPEKCDLNSILFLLTPAETITKMQTLVAQIAL
FEKHIKQDSLLKYVLPTVYKNNEDRYKGYTIRQLCQEMHDLYVSRNVKQLQKDLFRKATLPEYVLNPHDANIELIRNKVE
LVPLTDIVGRVAAEGALPYPPGVLCVVPGEKWSTTAHQYFLALEEGINTLPGFAPEIQGVYLQKDPDGRTRAYGYVLTDY

Sequences:

>Translated_720_residues
MPNLKIAYSPKVEQYFSTNRELVEIAKTDFTDVAAIVLSSSDVGEYLDRIKATKFDVPVFIVQTDEQQVDPKFYDSIYHI
QDLNGYDIKLYSRQIETAAKLYEEKMLPPFFKMLSEYVEMGNIAFDCPGHQGGQYYRKHPAGRFLYDFYGENIFRSDICN
ADVKLGDLLIHEGAACDAQKYAAQVFNADKTYFVLNGTSSSNKVALNAVLAPGDLVLFDRNNHKSNHHGALIQAGATPIY
LETARNPFGFIGGIDSHCFEEDYLKSLIKEVAPEKLNQKRPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWV
GYEQFIPMMKDCSPLLLELNENDPGILVTQSVHKQQAGFSQTSQIHKKDKHIKGQDRYVNHKRFNNAFMLHASTSPFYPL
FATLDVNAKIQGSEAGRRLWHECVKVGIEARKLVLNHCELIRPFIPTTIKGKKWQDYDTEEIATNLEFFKFHPTDTWHKF
EGYADEQYFVDPCKFLLTTPGISLETGEYEEFGVPATILANYLRENGIIPEKCDLNSILFLLTPAETITKMQTLVAQIAL
FEKHIKQDSLLKYVLPTVYKNNEDRYKGYTIRQLCQEMHDLYVSRNVKQLQKDLFRKATLPEYVLNPHDANIELIRNKVE
LVPLTDIVGRVAAEGALPYPPGVLCVVPGEKWSTTAHQYFLALEEGINTLPGFAPEIQGVYLQKDPDGRTRAYGYVLTDY
>Mature_719_residues
PNLKIAYSPKVEQYFSTNRELVEIAKTDFTDVAAIVLSSSDVGEYLDRIKATKFDVPVFIVQTDEQQVDPKFYDSIYHIQ
DLNGYDIKLYSRQIETAAKLYEEKMLPPFFKMLSEYVEMGNIAFDCPGHQGGQYYRKHPAGRFLYDFYGENIFRSDICNA
DVKLGDLLIHEGAACDAQKYAAQVFNADKTYFVLNGTSSSNKVALNAVLAPGDLVLFDRNNHKSNHHGALIQAGATPIYL
ETARNPFGFIGGIDSHCFEEDYLKSLIKEVAPEKLNQKRPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVG
YEQFIPMMKDCSPLLLELNENDPGILVTQSVHKQQAGFSQTSQIHKKDKHIKGQDRYVNHKRFNNAFMLHASTSPFYPLF
ATLDVNAKIQGSEAGRRLWHECVKVGIEARKLVLNHCELIRPFIPTTIKGKKWQDYDTEEIATNLEFFKFHPTDTWHKFE
GYADEQYFVDPCKFLLTTPGISLETGEYEEFGVPATILANYLRENGIIPEKCDLNSILFLLTPAETITKMQTLVAQIALF
EKHIKQDSLLKYVLPTVYKNNEDRYKGYTIRQLCQEMHDLYVSRNVKQLQKDLFRKATLPEYVLNPHDANIELIRNKVEL
VPLTDIVGRVAAEGALPYPPGVLCVVPGEKWSTTAHQYFLALEEGINTLPGFAPEIQGVYLQKDPDGRTRAYGYVLTDY

Specific function: Spermidine biosynthesis from ornithine. [C]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family

Homologues:

Organism=Escherichia coli, GI1786909, Length=718, Percent_Identity=66.4345403899721, Blast_Score=1014, Evalue=0.0,
Organism=Escherichia coli, GI87082193, Length=718, Percent_Identity=65.8774373259053, Blast_Score=999, Evalue=0.0,
Organism=Escherichia coli, GI221142684, Length=682, Percent_Identity=30.9384164222874, Blast_Score=340, Evalue=2e-94,
Organism=Escherichia coli, GI1790573, Length=619, Percent_Identity=35.2180936995153, Blast_Score=332, Evalue=4e-92,
Organism=Escherichia coli, GI1786384, Length=630, Percent_Identity=34.7619047619048, Blast_Score=317, Evalue=1e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DCOR_HAEIN (P44317)

Other databases:

- EMBL:   L42023
- PIR:   F64079
- RefSeq:   NP_438749.1
- ProteinModelPortal:   P44317
- SMR:   P44317
- GeneID:   949823
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0591
- NMPDR:   fig|71421.1.peg.562
- TIGR:   HI_0591
- HOGENOM:   HBG301265
- OMA:   PDDICSS
- ProtClustDB:   PRK13578
- BioCyc:   HINF71421:HI_0591-MONOMER
- BRENDA:   4.1.1.17
- GO:   GO:0005737
- InterPro:   IPR011006
- InterPro:   IPR005308
- InterPro:   IPR011193
- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- Gene3D:   G3DSA:3.90.100.10
- Gene3D:   G3DSA:3.40.640.10
- Gene3D:   G3DSA:3.90.1150.10
- PIRSF:   PIRSF009393

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C; PF03709 OKR_DC_1_N; SSF52172 CheY_like; SSF55904 Decarbxylse_C; SSF53383 PyrdxlP-dep_Trfase_major

EC number: =4.1.1.17

Molecular weight: Translated: 82027; Mature: 81896

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS00703 OKR_DC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNLKIAYSPKVEQYFSTNRELVEIAKTDFTDVAAIVLSSSDVGEYLDRIKATKFDVPVF
CCCCEEEECCCHHHHHCCCHHHHHHHHCCHHHHHHHEECCCCHHHHHHHHHCCEECCEEE
IVQTDEQQVDPKFYDSIYHIQDLNGYDIKLYSRQIETAAKLYEEKMLPPFFKMLSEYVEM
EEECCCCCCCHHHHHCEEEEECCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
GNIAFDCPGHQGGQYYRKHPAGRFLYDFYGENIFRSDICNADVKLGDLLIHEGAACDAQK
CCEEEECCCCCCCCHHHHCCCCCCHHHHHCCCHHHHHCCCCCCEECCEEEECCCCCCHHH
YAAQVFNADKTYFVLNGTSSSNKVALNAVLAPGDLVLFDRNNHKSNHHGALIQAGATPIY
HHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCEEECCCCEEE
LETARNPFGFIGGIDSHCFEEDYLKSLIKEVAPEKLNQKRPFRLAVIQLGTYDGTIYNAR
EEECCCCCCEECCCCHHCCHHHHHHHHHHHHCHHHHCCCCCEEEEEEEEECCCCCCHHHH
QVVDKIGHLCDYILFDSAWVGYEQFIPMMKDCSPLLLELNENDPGILVTQSVHKQQAGFS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEEHHHHHHHCCCH
QTSQIHKKDKHIKGQDRYVNHKRFNNAFMLHASTSPFYPLFATLDVNAKIQGSEAGRRLW
HHHHHHHHHCCCCCCCCCCCHHCCCCEEEEEECCCCCCEEEEEEEECEEEECCHHHHHHH
HECVKVGIEARKLVLNHCELIRPFIPTTIKGKKWQDYDTEEIATNLEFFKFHPTDTWHKF
HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCEEEEECCCCCCHHC
EGYADEQYFVDPCKFLLTTPGISLETGEYEEFGVPATILANYLRENGIIPEKCDLNSILF
CCCCCCCEECCHHHHHHCCCCCEEECCCCHHHCCCHHHHHHHHHHCCCCCCCCCCCCEEE
LLTPAETITKMQTLVAQIALFEKHIKQDSLLKYVLPTVYKNNEDRYKGYTIRQLCQEMHD
EEECHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
LYVSRNVKQLQKDLFRKATLPEYVLNPHDANIELIRNKVELVPLTDIVGRVAAEGALPYP
HHHHCCHHHHHHHHHHHCCCCHHHCCCCCCCHHEEECCEEEEEHHHHHHHHHHCCCCCCC
PGVLCVVPGEKWSTTAHQYFLALEEGINTLPGFAPEIQGVYLQKDPDGRTRAYGYVLTDY
CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECC
>Mature Secondary Structure 
PNLKIAYSPKVEQYFSTNRELVEIAKTDFTDVAAIVLSSSDVGEYLDRIKATKFDVPVF
CCCEEEECCCHHHHHCCCHHHHHHHHCCHHHHHHHEECCCCHHHHHHHHHCCEECCEEE
IVQTDEQQVDPKFYDSIYHIQDLNGYDIKLYSRQIETAAKLYEEKMLPPFFKMLSEYVEM
EEECCCCCCCHHHHHCEEEEECCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
GNIAFDCPGHQGGQYYRKHPAGRFLYDFYGENIFRSDICNADVKLGDLLIHEGAACDAQK
CCEEEECCCCCCCCHHHHCCCCCCHHHHHCCCHHHHHCCCCCCEECCEEEECCCCCCHHH
YAAQVFNADKTYFVLNGTSSSNKVALNAVLAPGDLVLFDRNNHKSNHHGALIQAGATPIY
HHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCEEECCCCEEE
LETARNPFGFIGGIDSHCFEEDYLKSLIKEVAPEKLNQKRPFRLAVIQLGTYDGTIYNAR
EEECCCCCCEECCCCHHCCHHHHHHHHHHHHCHHHHCCCCCEEEEEEEEECCCCCCHHHH
QVVDKIGHLCDYILFDSAWVGYEQFIPMMKDCSPLLLELNENDPGILVTQSVHKQQAGFS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEEHHHHHHHCCCH
QTSQIHKKDKHIKGQDRYVNHKRFNNAFMLHASTSPFYPLFATLDVNAKIQGSEAGRRLW
HHHHHHHHHCCCCCCCCCCCHHCCCCEEEEEECCCCCCEEEEEEEECEEEECCHHHHHHH
HECVKVGIEARKLVLNHCELIRPFIPTTIKGKKWQDYDTEEIATNLEFFKFHPTDTWHKF
HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCEEEEECCCCCCHHC
EGYADEQYFVDPCKFLLTTPGISLETGEYEEFGVPATILANYLRENGIIPEKCDLNSILF
CCCCCCCEECCHHHHHHCCCCCEEECCCCHHHCCCHHHHHHHHHHCCCCCCCCCCCCEEE
LLTPAETITKMQTLVAQIALFEKHIKQDSLLKYVLPTVYKNNEDRYKGYTIRQLCQEMHD
EEECHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
LYVSRNVKQLQKDLFRKATLPEYVLNPHDANIELIRNKVELVPLTDIVGRVAAEGALPYP
HHHHCCHHHHHHHHHHHCCCCHHHCCCCCCCHHEEECCEEEEEHHHHHHHHHHCCCCCCC
PGVLCVVPGEKWSTTAHQYFLALEEGINTLPGFAPEIQGVYLQKDPDGRTRAYGYVLTDY
CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800