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The map label for this gene is yfhQ [C]

Identifier: 16272328

GI number: 16272328

Start: 400960

End: 401685

Strand: Reverse

Name: yfhQ [C]

Synonym: HI0380

Alternate gene names: 16272328

Gene position: 401685-400960 (Counterclockwise)

Preceding gene: 16272329

Following gene: 16272327

Centisome position: 21.95

GC content: 35.12

Gene sequence:

>726_bases
ATGTTGGAAAATATTCGTATTGTTTTAATTGAAACTTCGCACAGTGGTAATATTGGTTCTGCGGCTAGAGCAATGAAAAC
GATGGGATTGACCCAGCTTTGTCTTGTTTCACCTAAATCTGTTGATGAACAATCTTATGCCCTTTCAGCTGGCGCAGAAA
ATATTGTAAAAAATGCTAGGGTTGTCGATAGTTTTGATGAAGCCGTCGATGATTGCCCTTTGGTAATTGGAACAAGTGCT
CGCTTACGTCATTTACAAAATACATTGATCGAGCCTCGAGAATGCGCGGAGAAAGTTGTAGCGTATAAAGGCAAGATAGC
TATTGTGTTTGGTCGTGAGCGTATTGGATTAACCAATGAAGAACTGCTGAAATGTCATTATCACTTGAATATTCCAGCGA
ATCCTGATTATTCTTCTTTAAATTTAGCAATGGCTGTGCAGCTGGTAAGTTATGAATTGCGTATGGCTTTCTTAGTTCAA
AATAATAAGAAAAATTCACTTTCTTTAATAGAGAAAAACTATCCAACAACAGATCAGTTAGCTTATTTTTTTGACTACAC
AGAACGTATATATCAGTCTCTTGGATTTATTCAAAATCAAGGAGTTATGCGTAAATTAAAGCGTTTATACTATCGTGCAA
AATTAGAGAAAAACGAATTAAATATTTTAAATGGCATGCTAAGTGCGGTTGAAAAACGAATTGATTTAACAAAAGAGGAT
AATTGA

Upstream 100 bases:

>100_bases
TCATCCCTAATATTTTAAATTTCTTTAATTAGCTTAAATTCTTGACTATTTTTAGCGGTTATTGTGGTAGAATACCCTTA
AATTTTAGTCGGGTATCATT

Downstream 100 bases:

>100_bases
CTAAATTAGTCAGATATGTAAGTATTGCGCAATTAATTTTTAGGGATTCTTTATGAAACTTACATCGAAAGGTCGTTATG
CAGTTACAGCCGTTTTAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MLENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYALSAGAENIVKNARVVDSFDEAVDDCPLVIGTSA
RLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQ
NNKKNSLSLIEKNYPTTDQLAYFFDYTERIYQSLGFIQNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKRIDLTKED
N

Sequences:

>Translated_241_residues
MLENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYALSAGAENIVKNARVVDSFDEAVDDCPLVIGTSA
RLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQ
NNKKNSLSLIEKNYPTTDQLAYFFDYTERIYQSLGFIQNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKRIDLTKED
N
>Mature_241_residues
MLENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYALSAGAENIVKNARVVDSFDEAVDDCPLVIGTSA
RLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQ
NNKKNSLSLIEKNYPTTDQLAYFFDYTERIYQSLGFIQNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKRIDLTKED
N

Specific function: Unknown

COG id: COG0565

COG function: function code J; rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1788881, Length=239, Percent_Identity=53.5564853556485, Blast_Score=257, Evalue=4e-70,
Organism=Escherichia coli, GI1790865, Length=165, Percent_Identity=35.7575757575758, Blast_Score=97, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004384
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27252; Mature: 27252

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYALSAGAENIVKNAR
CCCCEEEEEEEECCCCCCHHHHHHHHHHCHHHHEEECCCCCCCHHHHHHCCHHHHHHHHH
VVDSFDEAVDDCPLVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE
HHHHHHHHHHCCCEEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHH
ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTDQL
HHEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHCCCCCCHHHH
AYFFDYTERIYQSLGFIQNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKRIDLTKED
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
N
C
>Mature Secondary Structure
MLENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYALSAGAENIVKNAR
CCCCEEEEEEEECCCCCCHHHHHHHHHHCHHHHEEECCCCCCCHHHHHHCCHHHHHHHHH
VVDSFDEAVDDCPLVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE
HHHHHHHHHHCCCEEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHH
ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTDQL
HHEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHCCCCCCHHHH
AYFFDYTERIYQSLGFIQNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKRIDLTKED
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]