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The map label for this gene is recO [H]

Identifier: 16272284

GI number: 16272284

Start: 359129

End: 359839

Strand: Direct

Name: recO [H]

Synonym: HI0332

Alternate gene names: 16272284

Gene position: 359129-359839 (Clockwise)

Preceding gene: 16272283

Following gene: 16272285

Centisome position: 19.62

GC content: 40.65

Gene sequence:

>711_bases
GTGCAAAGCGAACTTCAACGTGGTTTTGTTTTGCATCGTCGCCCTTATAGTGAAACGAGCTTATTGGTAGATTTATTCAC
TGAAGAAAGTGGGCGTTTAACCGTGATTGCAAAAGGGGCGCGGGCAAAGCGTTCATCTTGGAAATCGGTTTTGCAACCTT
TCACACCTTTATTGTTGCGTTGGACGGGAAAAAGCACATTGAAAACCCTCACTAAAGCTGAACCTGCCGCAATTACACTG
CCTTTACAACAAATCGCCCTTTATAGTGGATTTTATGTAAATGAATTACTCACTCGAGTTATTGAGTCTGAAACGCCAAA
TCCTGCACTTTTTCAACATTATTTAAAATGCTTAACGGGCTTGGCAACGGAAACTAATATTGAGCCAACGTTGCGTCTTT
TTGAATTTCAACTGTTACAAATTCTTGGTTACGGCGTGGATTTTCTGCATTGTGCTGGTTCTGGCGAGCCAGTGGATTTC
TCAATGACATACCGTTATCGTGAGGAAAAAGGTTTCATTGCGTCTTTAGTGAAAGATAATCTCACGTTTTACGGCAGAGA
TTTGTTAGCCTTTGAAGCCCTTGATTTTTCCGATGATGCGGTACGTCAAGCGGCAAAACGTTTTACTCGTATTGCACTGA
AACCTTATCTTGGCGATAAACCGCTAAAAAGCCGAGAGTTATTCACTCAAAATATTTTACTTTTAAAATAA

Upstream 100 bases:

>100_bases
AAGAGCGTGATGATTTTAGTACGCTAAAAACGAATCTCGGCGAAATTTTAGCAACGCAATGTGTCTCACAAACAAGTGAA
CGCTTATCTGGACAATAATC

Downstream 100 bases:

>100_bases
TGGTTCTTCTTTATACCCCAAAGCAAAAAACAAAAAATGTTCAAACCATTACGGCTGATATTCTTGATTTAGATTATCAA
GGTTTAGGCGTGGCGAAAAT

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MQSELQRGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKSTLKTLTKAEPAAITL
PLQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLATETNIEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDF
SMTYRYREEKGFIASLVKDNLTFYGRDLLAFEALDFSDDAVRQAAKRFTRIALKPYLGDKPLKSRELFTQNILLLK

Sequences:

>Translated_236_residues
MQSELQRGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKSTLKTLTKAEPAAITL
PLQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLATETNIEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDF
SMTYRYREEKGFIASLVKDNLTFYGRDLLAFEALDFSDDAVRQAAKRFTRIALKPYLGDKPLKSRELFTQNILLLK
>Mature_236_residues
MQSELQRGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLRWTGKSTLKTLTKAEPAAITL
PLQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTGLATETNIEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDF
SMTYRYREEKGFIASLVKDNLTFYGRDLLAFEALDFSDDAVRQAAKRFTRIALKPYLGDKPLKSRELFTQNILLLK

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

Organism=Escherichia coli, GI2367140, Length=226, Percent_Identity=64.6017699115044, Blast_Score=285, Evalue=1e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 26862; Mature: 26862

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSELQRGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLR
CCCCHHHCEEEECCCCCHHHHEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEE
WTGKSTLKTLTKAEPAAITLPLQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTG
ECCHHHHHHHHCCCCCEEEECHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
LATETNIEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDFSMTYRYREEKGFIASLVKDN
CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEEEEHHCCHHHHHHHCC
LTFYGRDLLAFEALDFSDDAVRQAAKRFTRIALKPYLGDKPLKSRELFTQNILLLK
CHHHCCHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCEEEEC
>Mature Secondary Structure
MQSELQRGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLR
CCCCHHHCEEEECCCCCHHHHEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEE
WTGKSTLKTLTKAEPAAITLPLQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTG
ECCHHHHHHHHCCCCCEEEECHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
LATETNIEPTLRLFEFQLLQILGYGVDFLHCAGSGEPVDFSMTYRYREEKGFIASLVKDN
CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEEEEHHCCHHHHHHHCC
LTFYGRDLLAFEALDFSDDAVRQAAKRFTRIALKPYLGDKPLKSRELFTQNILLLK
CHHHCCHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA