Click here to switch to the map view.

The map label for this gene is yafM [C]

Identifier: 16272179

GI number: 16272179

Start: 234763

End: 235293

Strand: Direct

Name: yafM [C]

Synonym: HI0217

Alternate gene names: 16272179

Gene position: 234763-235293 (Clockwise)

Preceding gene: 16272178

Following gene: 16272183

Centisome position: 12.83

GC content: 32.2

Gene sequence:

>531_bases
ATGTCTAATTATCGGCGCGATTTTACTAAAGGTGGATTATATTTTTTCACAATTGTTTTACAAGATAGAACAAAATCTTA
TCTAACTGACTATATCAATGAATTTAGATCTGCATATAAACAAACTTGTGAACATTATCCATTCGAAACAGTAGCAATTT
GTATTTTGCCCGATCATATTCATTTACTGATGCAATTACCTGAAAATGATGATAATTACGCAATACGCATCGCATATTTA
AAAACACAATTTACACGACAACTTCCAAAAGAATGCCGACAATTTAATAAAAATAGACAAAAATATCGAGAATCAGGTAT
TTGGCAACGCCGATTTTGGGAGCATTTAATTCGTGATGATAAAGATTTAGCGAATCATTTAGATTATATTTATTACAATC
CTGTGAAACACGGCTATGTTGAGGTAGTAAAAGATTGGCCGTATTCTTCCTTCCATCGTGATGTGAAAGCAGAGATTTAT
CCTGAAGATTGGGGAGGCAACCCAGATTTGAAAATTAAAGGTGATATATAA

Upstream 100 bases:

>100_bases
ACCATAACAAACGGTGGGTTAAAGCTCACCCTACAATGTAATGAGAATATTTTTATGGTGGGCTAAAGCCCACCCTACGA
ACTACAATTTGGAATAATAT

Downstream 100 bases:

>100_bases
CAATACTGTAGGGTGGGCTTCAGCCCACAATTAACCATAACAAACGGTGGGCTAAAGCCCACCCTACAATGTAATGAGAA
TATTTTTATGATGGGCTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSNYRRDFTKGGLYFFTIVLQDRTKSYLTDYINEFRSAYKQTCEHYPFETVAICILPDHIHLLMQLPENDDNYAIRIAYL
KTQFTRQLPKECRQFNKNRQKYRESGIWQRRFWEHLIRDDKDLANHLDYIYYNPVKHGYVEVVKDWPYSSFHRDVKAEIY
PEDWGGNPDLKIKGDI

Sequences:

>Translated_176_residues
MSNYRRDFTKGGLYFFTIVLQDRTKSYLTDYINEFRSAYKQTCEHYPFETVAICILPDHIHLLMQLPENDDNYAIRIAYL
KTQFTRQLPKECRQFNKNRQKYRESGIWQRRFWEHLIRDDKDLANHLDYIYYNPVKHGYVEVVKDWPYSSFHRDVKAEIY
PEDWGGNPDLKIKGDI
>Mature_175_residues
SNYRRDFTKGGLYFFTIVLQDRTKSYLTDYINEFRSAYKQTCEHYPFETVAICILPDHIHLLMQLPENDDNYAIRIAYLK
TQFTRQLPKECRQFNKNRQKYRESGIWQRRFWEHLIRDDKDLANHLDYIYYNPVKHGYVEVVKDWPYSSFHRDVKAEIYP
EDWGGNPDLKIKGDI

Specific function: Unknown

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yafM

Homologues:

Organism=Escherichia coli, GI1786422, Length=167, Percent_Identity=45.5089820359281, Blast_Score=147, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y217_HAEIN (P43965)

Other databases:

- EMBL:   L42023
- PIR:   A64004
- RefSeq:   NP_438385.1
- ProteinModelPortal:   P43965
- GeneID:   951128
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0217
- TIGR:   HI_0217
- HOGENOM:   HBG576511
- OMA:   RYWEHLI
- ProtClustDB:   CLSK892360
- BioCyc:   HINF71421:HI_0217-MONOMER
- InterPro:   IPR002686

Pfam domain/function: PF01797 Transposase_17

EC number: NA

Molecular weight: Translated: 21403; Mature: 21272

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNYRRDFTKGGLYFFTIVLQDRTKSYLTDYINEFRSAYKQTCEHYPFETVAICILPDHI
CCCCHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHH
HLLMQLPENDDNYAIRIAYLKTQFTRQLPKECRQFNKNRQKYRESGIWQRRFWEHLIRDD
HHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
KDLANHLDYIYYNPVKHGYVEVVKDWPYSSFHRDVKAEIYPEDWGGNPDLKIKGDI
HHHHHHCCEEEECCCCCCHHHHHHCCCCHHHHCCCCEEECCCCCCCCCCEEEECCC
>Mature Secondary Structure 
SNYRRDFTKGGLYFFTIVLQDRTKSYLTDYINEFRSAYKQTCEHYPFETVAICILPDHI
CCCHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHH
HLLMQLPENDDNYAIRIAYLKTQFTRQLPKECRQFNKNRQKYRESGIWQRRFWEHLIRDD
HHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
KDLANHLDYIYYNPVKHGYVEVVKDWPYSSFHRDVKAEIYPEDWGGNPDLKIKGDI
HHHHHHCCEEEECCCCCCHHHHHHCCCCHHHHCCCCEEECCCCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800