Click here to switch to the map view.

The map label for this gene is rodA

Identifier: 16272006

GI number: 16272006

Start: 32341

End: 33456

Strand: Reverse

Name: rodA

Synonym: HI0031

Alternate gene names: 16272006

Gene position: 33456-32341 (Counterclockwise)

Preceding gene: 16272007

Following gene: 16272005

Centisome position: 1.83

GC content: 38.62

Gene sequence:

>1116_bases
ATGGAAGATAAAATCCCTTTTTGGTTGCGTGTTTGGCAACGTTTGCATATTGATTTTTGGCTGTTTATCGGACTTCTTGC
AATAACTGCTTATGGTATGCTGGTGTTATATAGTGCATCAGGTGCCAGCGAAACGATGTTTAATAGCCGAATTATTCAGG
TCTTACTTGGATTTATTGTTATGCTGTTAATGGCTCAATTTCCACCAAGATTTTACCAACGCATCGCACCTTATCTTTAT
TTAATTGGTTTTGTGTTATTGATCTTGGTAGATGTTATTGGTACGACAAGTAAAGGTGCACAGCGTTGGCTTGATCTTGG
ATTTATTCGTTTTCAACCCTCTGAAATTGTAAAACTTGCTGTGCCATTAATGGTGGCGGTGTATTTAGGTAATCGCCCGC
TTCCACCTAAATTAAGTGAAACATTTATAGCGATTGCAATGATTCTACTGCCAACATTGCTTGTGGCGATTCAGCCTGAT
TTAGGCACATCAATTTTGGTCAGTGCGTCAGGTTTATTTGTCGTGTTTTTAGCAGGAATGAGCTGGTGGCTTATTTTAGC
GGCAGTGATTGGCTTAGCTGGATTTATTCCGATCATGTGGTTATATCTAATGCACGATTATCAACGCACTCGCGTTCTCA
CATTATTGGACCCAGAAAAAGATCCTCTCGGTGCTGGCTATCATATTTTACAATCAAAGATTGCGATTGGTTCTGGTGGA
TTAAGCGGAAAAGGCTGGATGCAGGGGACTCAATCACAATTAGAATTTTTGCCCGAACCTCATACAGATTTTATTTTTGC
GGTAATGGGTGAAGAGCACGGAATGATTGGTTTTTTGATTTTAATGGCGATTTACTTGTTTATTATTGTGCGAGGTTTAA
TGATTGCCGTAAATGCTCAAACTTCTTTTGGGCGTATTCTTGCTGGTGCAACAACATTAATTTTCTTTGTTTATGTATTT
GTGAATATTGGAATGGTAAGCGGAATTTTGCCTGTTGTGGGTGTGCCATTACCTTTATTTAGTTATGGTGGTACCTCTTA
TGTTGCGATTATGGCAAGTTTTGGTTTACTGATGTCTATTCATACGCATAAAAGTCAATTTATGAAAAGGAGCTAA

Upstream 100 bases:

>100_bases
GTGATGGATTACTATTTAAATCAGCGTTTACCACAAGTTGAAAAATATAATGTACCTATTCAGCAAAAAAAAGATTTGTC
ACAAGAGAGCGAACAAATAA

Downstream 100 bases:

>100_bases
TTTCATTTTTTCTTTCTTAAAGAAAGAATAAATGAAAAGCGTTAATATTTTATGAAATTAAAAACTGGGTTAAATTTGAC
CGCACTTTTGCTATTTATGA

Product: rod shape-determining protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MEDKIPFWLRVWQRLHIDFWLFIGLLAITAYGMLVLYSASGASETMFNSRIIQVLLGFIVMLLMAQFPPRFYQRIAPYLY
LIGFVLLILVDVIGTTSKGAQRWLDLGFIRFQPSEIVKLAVPLMVAVYLGNRPLPPKLSETFIAIAMILLPTLLVAIQPD
LGTSILVSASGLFVVFLAGMSWWLILAAVIGLAGFIPIMWLYLMHDYQRTRVLTLLDPEKDPLGAGYHILQSKIAIGSGG
LSGKGWMQGTQSQLEFLPEPHTDFIFAVMGEEHGMIGFLILMAIYLFIIVRGLMIAVNAQTSFGRILAGATTLIFFVYVF
VNIGMVSGILPVVGVPLPLFSYGGTSYVAIMASFGLLMSIHTHKSQFMKRS

Sequences:

>Translated_371_residues
MEDKIPFWLRVWQRLHIDFWLFIGLLAITAYGMLVLYSASGASETMFNSRIIQVLLGFIVMLLMAQFPPRFYQRIAPYLY
LIGFVLLILVDVIGTTSKGAQRWLDLGFIRFQPSEIVKLAVPLMVAVYLGNRPLPPKLSETFIAIAMILLPTLLVAIQPD
LGTSILVSASGLFVVFLAGMSWWLILAAVIGLAGFIPIMWLYLMHDYQRTRVLTLLDPEKDPLGAGYHILQSKIAIGSGG
LSGKGWMQGTQSQLEFLPEPHTDFIFAVMGEEHGMIGFLILMAIYLFIIVRGLMIAVNAQTSFGRILAGATTLIFFVYVF
VNIGMVSGILPVVGVPLPLFSYGGTSYVAIMASFGLLMSIHTHKSQFMKRS
>Mature_371_residues
MEDKIPFWLRVWQRLHIDFWLFIGLLAITAYGMLVLYSASGASETMFNSRIIQVLLGFIVMLLMAQFPPRFYQRIAPYLY
LIGFVLLILVDVIGTTSKGAQRWLDLGFIRFQPSEIVKLAVPLMVAVYLGNRPLPPKLSETFIAIAMILLPTLLVAIQPD
LGTSILVSASGLFVVFLAGMSWWLILAAVIGLAGFIPIMWLYLMHDYQRTRVLTLLDPEKDPLGAGYHILQSKIAIGSGG
LSGKGWMQGTQSQLEFLPEPHTDFIFAVMGEEHGMIGFLILMAIYLFIIVRGLMIAVNAQTSFGRILAGATTLIFFVYVF
VNIGMVSGILPVVGVPLPLFSYGGTSYVAIMASFGLLMSIHTHKSQFMKRS

Specific function: This is one of the proteins responsible for the rod shape of the cell. It is required for the expression of the enzymatic activity of PBP2, which is thought to synthesize peptidoglycan in the step of initiation of cell elongation

COG id: COG0772

COG function: function code D; Bacterial cell division membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ftsW/rodA/spoVE family

Homologues:

Organism=Escherichia coli, GI1786853, Length=358, Percent_Identity=63.1284916201117, Blast_Score=435, Evalue=1e-123,
Organism=Escherichia coli, GI1786277, Length=355, Percent_Identity=35.4929577464789, Blast_Score=182, Evalue=4e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RODA_HAEIN (P44468)

Other databases:

- EMBL:   L42023
- PIR:   B64044
- RefSeq:   NP_438204.1
- GeneID:   950927
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0031
- TIGR:   HI_0031
- HOGENOM:   HBG729614
- OMA:   WANANPG
- ProtClustDB:   CLSK870668
- BioCyc:   HINF71421:HI_0031-MONOMER
- InterPro:   IPR001182
- InterPro:   IPR018365
- InterPro:   IPR011923
- TIGRFAMs:   TIGR02210

Pfam domain/function: PF01098 FTSW_RODA_SPOVE

EC number: NA

Molecular weight: Translated: 41165; Mature: 41165

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS00428 FTSW_RODA_SPOVE

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xbbbfaa4)-; HASH(0xb0af9c8)-; HASH(0xb2de894)-; HASH(0xbbb6e44)-; HASH(0xb1b4894)-; HASH(0xbdd6464)-; HASH(0xae4b800)-; HASH(0xb1a98b4)-; HASH(0xb199fcc)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDKIPFWLRVWQRLHIDFWLFIGLLAITAYGMLVLYSASGASETMFNSRIIQVLLGFIV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHH
MLLMAQFPPRFYQRIAPYLYLIGFVLLILVDVIGTTSKGAQRWLDLGFIRFQPSEIVKLA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECHHHHHHHH
VPLMVAVYLGNRPLPPKLSETFIAIAMILLPTLLVAIQPDLGTSILVSASGLFVVFLAGM
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH
SWWLILAAVIGLAGFIPIMWLYLMHDYQRTRVLTLLDPEKDPLGAGYHILQSKIAIGSGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHCCCCC
LSGKGWMQGTQSQLEFLPEPHTDFIFAVMGEEHGMIGFLILMAIYLFIIVRGLMIAVNAQ
CCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEECC
TSFGRILAGATTLIFFVYVFVNIGMVSGILPVVGVPLPLFSYGGTSYVAIMASFGLLMSI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHH
HTHKSQFMKRS
HHHHHHHHCCH
>Mature Secondary Structure
MEDKIPFWLRVWQRLHIDFWLFIGLLAITAYGMLVLYSASGASETMFNSRIIQVLLGFIV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHH
MLLMAQFPPRFYQRIAPYLYLIGFVLLILVDVIGTTSKGAQRWLDLGFIRFQPSEIVKLA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECHHHHHHHH
VPLMVAVYLGNRPLPPKLSETFIAIAMILLPTLLVAIQPDLGTSILVSASGLFVVFLAGM
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH
SWWLILAAVIGLAGFIPIMWLYLMHDYQRTRVLTLLDPEKDPLGAGYHILQSKIAIGSGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHCCCCC
LSGKGWMQGTQSQLEFLPEPHTDFIFAVMGEEHGMIGFLILMAIYLFIIVRGLMIAVNAQ
CCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEECC
TSFGRILAGATTLIFFVYVFVNIGMVSGILPVVGVPLPLFSYGGTSYVAIMASFGLLMSI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHH
HTHKSQFMKRS
HHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800