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The map label for this gene is rlpA [C]

Identifier: 16272005

GI number: 16272005

Start: 31426

End: 32289

Strand: Reverse

Name: rlpA [C]

Synonym: HI0030

Alternate gene names: 16272005

Gene position: 32289-31426 (Counterclockwise)

Preceding gene: 16272006

Following gene: 16272004

Centisome position: 1.76

GC content: 34.61

Gene sequence:

>864_bases
ATGAAATTAAAAACTGGGTTAAATTTGACCGCACTTTTGCTATTTATGATAAGCGTAGCTTTTCCTGCACAGGCTGATAC
GCAAAAAATGTATGGTATTCGAGGGGATAATCTTTCTATCGCAACTCAAATGCCTGCACCAAGGACTTATTCAGTAAAAG
GGCAAACTTATACCACTAAAAGTGGGAATGAAGCCAAATCTTATATTAAAGAAGGTTTAGCAAGTTATTATCATCTTAAA
TTTGATGGGCGCAAAACAGCAAGTGGCGATGTTTATAACTCAAAACAATTTACTGCAGCACATAAAACATTGCCAATAAA
TTCTTATGCTTTAGTGACAAATTTACATAACAATCGTAAAGTTATCGTACGTATTAATGATCGTGGGCCTTTTAGTGATA
AACGTTTAATTGATCTTTCACACGCTGCGGCAAAAGAAATTGGCTTAATTTCCCGCGGCATAGGGCAGGTAAGAATTGAG
GCGTTGCACGTTGCTAAAAATGGGAATTTATCAGGCGCAGCCACAAAAACACTGGCTAAACAAGCAAAAACTCAGGAAGC
TGCCGATCGTTTAGTATTAAAATCTAACACACTTTTTGATAACACATCTAAGTCAATAAATGCTCTAAAAGGAACCGAAT
TTTACTGTTTGAAAATGCTTGAATTAACCTCTCGTAGCCAAGCAAATAAATTAATTACGCAACTTGCGTTAGCGAATATT
CAGACTGAAGTAAATCGCTCAGGAAATAAATATGAAATTTATATTGGGCCTTTTGATGACAAAACAAAAATGGCACAAGT
GAGAACTAAATTACAAAAAATGGCAAATAATAAGCCATTAATTGTTTATACGTATAAAAATTAA

Upstream 100 bases:

>100_bases
ACTGATGTCTATTCATACGCATAAAAGTCAATTTATGAAAAGGAGCTAATTTCATTTTTTCTTTCTTAAAGAAAGAATAA
ATGAAAAGCGTTAATATTTT

Downstream 100 bases:

>100_bases
TTGTAGGAACACACTATGTTGAAAAGAACAACAAAAATCGCATTTTTATCAAGTTTTGTGGCACTTAGTGCTTTTTCGGT
ATCTGCAGAGGATATGCAGT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MKLKTGLNLTALLLFMISVAFPAQADTQKMYGIRGDNLSIATQMPAPRTYSVKGQTYTTKSGNEAKSYIKEGLASYYHLK
FDGRKTASGDVYNSKQFTAAHKTLPINSYALVTNLHNNRKVIVRINDRGPFSDKRLIDLSHAAAKEIGLISRGIGQVRIE
ALHVAKNGNLSGAATKTLAKQAKTQEAADRLVLKSNTLFDNTSKSINALKGTEFYCLKMLELTSRSQANKLITQLALANI
QTEVNRSGNKYEIYIGPFDDKTKMAQVRTKLQKMANNKPLIVYTYKN

Sequences:

>Translated_287_residues
MKLKTGLNLTALLLFMISVAFPAQADTQKMYGIRGDNLSIATQMPAPRTYSVKGQTYTTKSGNEAKSYIKEGLASYYHLK
FDGRKTASGDVYNSKQFTAAHKTLPINSYALVTNLHNNRKVIVRINDRGPFSDKRLIDLSHAAAKEIGLISRGIGQVRIE
ALHVAKNGNLSGAATKTLAKQAKTQEAADRLVLKSNTLFDNTSKSINALKGTEFYCLKMLELTSRSQANKLITQLALANI
QTEVNRSGNKYEIYIGPFDDKTKMAQVRTKLQKMANNKPLIVYTYKN
>Mature_287_residues
MKLKTGLNLTALLLFMISVAFPAQADTQKMYGIRGDNLSIATQMPAPRTYSVKGQTYTTKSGNEAKSYIKEGLASYYHLK
FDGRKTASGDVYNSKQFTAAHKTLPINSYALVTNLHNNRKVIVRINDRGPFSDKRLIDLSHAAAKEIGLISRGIGQVRIE
ALHVAKNGNLSGAATKTLAKQAKTQEAADRLVLKSNTLFDNTSKSINALKGTEFYCLKMLELTSRSQANKLITQLALANI
QTEVNRSGNKYEIYIGPFDDKTKMAQVRTKLQKMANNKPLIVYTYKN

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family

Homologues:

Organism=Escherichia coli, GI1786852, Length=134, Percent_Identity=43.2835820895522, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RLPA_HAEIN (Q57092)

Other databases:

- EMBL:   L42023
- PIR:   A64044
- RefSeq:   NP_438203.1
- GeneID:   950926
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0030
- TIGR:   HI_0030
- HOGENOM:   HBG495102
- OMA:   NIQTEVN
- ProtClustDB:   CLSK789914
- BioCyc:   HINF71421:HI_0030-MONOMER
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730
- Gene3D:   G3DSA:3.30.70.1070
- TIGRFAMs:   TIGR00413

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR; SSF50685 Barwin_like; SSF110997 Spore_cell-division_bac

EC number: NA

Molecular weight: Translated: 31803; Mature: 31803

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKTGLNLTALLLFMISVAFPAQADTQKMYGIRGDNLSIATQMPAPRTYSVKGQTYTTK
CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEECCCCCCEEEECCCEEECC
SGNEAKSYIKEGLASYYHLKFDGRKTASGDVYNSKQFTAAHKTLPINSYALVTNLHNNRK
CCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCEEEEHHHCCCCCCEEEEEECCCCCE
VIVRINDRGPFSDKRLIDLSHAAAKEIGLISRGIGQVRIEALHVAKNGNLSGAATKTLAK
EEEEECCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHH
QAKTQEAADRLVLKSNTLFDNTSKSINALKGTEFYCLKMLELTSRSQANKLITQLALANI
HHHHHHHHHHEEEECCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTEVNRSGNKYEIYIGPFDDKTKMAQVRTKLQKMANNKPLIVYTYKN
HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
>Mature Secondary Structure
MKLKTGLNLTALLLFMISVAFPAQADTQKMYGIRGDNLSIATQMPAPRTYSVKGQTYTTK
CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEECCCCCCEEEECCCEEECC
SGNEAKSYIKEGLASYYHLKFDGRKTASGDVYNSKQFTAAHKTLPINSYALVTNLHNNRK
CCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCEEEEHHHCCCCCCEEEEEECCCCCE
VIVRINDRGPFSDKRLIDLSHAAAKEIGLISRGIGQVRIEALHVAKNGNLSGAATKTLAK
EEEEECCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHH
QAKTQEAADRLVLKSNTLFDNTSKSINALKGTEFYCLKMLELTSRSQANKLITQLALANI
HHHHHHHHHHEEEECCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTEVNRSGNKYEIYIGPFDDKTKMAQVRTKLQKMANNKPLIVYTYKN
HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023