| Definition | Haemophilus influenzae Rd KW20 chromosome, complete genome. |
|---|---|
| Accession | NC_000907 |
| Length | 1,830,138 |
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The map label for this gene is ydiD [C]
Identifier: 16271978
GI number: 16271978
Start: 1190
End: 3013
Strand: Direct
Name: ydiD [C]
Synonym: HI0002
Alternate gene names: 16271978
Gene position: 1190-3013 (Clockwise)
Preceding gene: 16271977
Following gene: 16271982
Centisome position: 0.07
GC content: 37.28
Gene sequence:
>1824_bases ATGAAAATCAAAAATAGGGTTAATATGAATCTCGATCTCCATTTTGTTCATCGTATTCAACAACAAGCCAAAACTCGTAC AAATATGACCGCACTTCGCTATAAAGAACACGGCTTGTGGCGAGATATCTCTTGGAAAAACTTTCAAGAGCAACTCAATC AACTTTCTCGAGCATTGCTTGCTCACAATATTGACGTACAAGATAAAATCGCCATTTTTGCCCATAATATGGAACGTTGG ACAATCGTTGACATTGCGACCTTACAAATTCGAGCAATCACAGTGCCTATTTACGCAACCAATACAGCCCAGCAAGCAGA ATTTATCCTAAATCACGCCGATGTAAAAATTCTCTTCGTCGGCGATCAAGAGCAATACGATCAAACATTGGAAATTGCTC ATCATTGTCCAAAATTACAAAAAATTGTAGCAATGAAATCCACCATTCAATTACAACAAGATCCTCTTTCTTGCACTTGG GAAAGTTTTATTAAAACAGGTTCAAACGCCCAACAAGATGAACTAACCCAACGCTTAAACCAAAAACAATTATCGGATTT ATTTACGATTATTTATACCTCAGGCACAACGGGAGAGCCTAAAGGTGTCATGTTAGATTACGCTAATCTCGCTCACCAAT TAGAAACACATGATCTTTCACTTAATGTGACAGATCAGGATATTTCACTTTCTTTTTTACCATTCTCTCATATTTTTGAA CGGGCATGGGCGGCTTATATTCTTCATAGAGGCGCAATACTTTGCTATTTAGAAGACACTAATCAAGTGCGGTCAGCTTT AACGGAAATTCGCCCAACTTTAATGTGCGCCGTACCACGTTTTTACGAAAAAATTTATGCTGCCGTATTGGATAAAGTTC AAAAAGCCCCAAAACTTCGCCAAATTATGTTTCATTGGGCAATTTCCGTGGGACAAAAATATTTTGATCTACGTGCGAAT AACAAAGCTATTCCGTTCTTATTGAAGAAACAATTTGCTTTAGCAGATAAATTAGTGCTCTCAAAACTTCGTCAATTATT GGGGGGACGAATAAAAATGATGCCTTGCGGAGGAGCAAAATTAGAACCGGCTATTGGGCTATTTTTCCATGCTATTGGTA TCAACATCAAATTAGGCTATGGTATGACAGAAACAACTGCAACCGTTTCTTGCTGGCATGATTTCCAATTTAACCCAAAT TCAATCGGCACACTGATGCCAAAAGCGGAAGTGAAAATTGGGGAAAATAATGAAATCCTTGTGCGTGGCGGAATGGTGAT GAAAGGCTATTACAAGAAGCCAGAAGAAACGGCTCAAGCCTTCACCGAAGATGGTTTCTTAAAAACTGGCGATGCAGGAG AATTTGACGAACAAGGCAATTTATTTATTACCGATCGTATCAAAGAATTAATGAAAACCTCAAACGGCAAATATATCGCA CCACAATATATCGAAAGCAAAATCGGTAAAGATAAATTTATCGAACAAATTGCGATCATCGCTGATGCGAAAAAATATGT ATCCGCGCTTATTGTGCCTTGCTTTGATAGTTTGGAAGAATACGCTAAACAGCTCAATATTAAATATCATGACCGTTTAG AACTACTAAAAAATTCTGACATTCTGAAAATGTTTGAGCATCGTATTAATGCGGTGCAAAAAGAATTGGCTCATTTCGAG CAAGTAAAAAAATTCACGTTACTTTCTCAAGCATTCAGCATTAAATTAGGCGAAATTACACCAACATTAAAATTACGTAG AAAAGTGATTTTAGAACGTTATCGCAAGCAAATTGAAGCAATGTATCATTCACAAGAAGCATAG
Upstream 100 bases:
>100_bases AAAAATGAACAAGGGATCACTAAAAATAATTTAAAACAATCAATATTCTTCTAGCTTTTATTCCTATTTAAGATTATATT AGCGCACAACTGTTCGCTCA
Downstream 100 bases:
>100_bases CTAAAAGGCTCTCAATTGAGAGCCTTTCTTTTCTAATTATTCAGGAAATTTTTCTTCTAAAATCAATGCAAGTCCATCTT CATTATTGGTTGCCGTAACC
Product: long chain fatty acid CoA ligase
Products: NA
Alternate protein names: Long-chain acyl-CoA synthetase; LACS
Number of amino acids: Translated: 607; Mature: 607
Protein sequence:
>607_residues MKIKNRVNMNLDLHFVHRIQQQAKTRTNMTALRYKEHGLWRDISWKNFQEQLNQLSRALLAHNIDVQDKIAIFAHNMERW TIVDIATLQIRAITVPIYATNTAQQAEFILNHADVKILFVGDQEQYDQTLEIAHHCPKLQKIVAMKSTIQLQQDPLSCTW ESFIKTGSNAQQDELTQRLNQKQLSDLFTIIYTSGTTGEPKGVMLDYANLAHQLETHDLSLNVTDQDISLSFLPFSHIFE RAWAAYILHRGAILCYLEDTNQVRSALTEIRPTLMCAVPRFYEKIYAAVLDKVQKAPKLRQIMFHWAISVGQKYFDLRAN NKAIPFLLKKQFALADKLVLSKLRQLLGGRIKMMPCGGAKLEPAIGLFFHAIGINIKLGYGMTETTATVSCWHDFQFNPN SIGTLMPKAEVKIGENNEILVRGGMVMKGYYKKPEETAQAFTEDGFLKTGDAGEFDEQGNLFITDRIKELMKTSNGKYIA PQYIESKIGKDKFIEQIAIIADAKKYVSALIVPCFDSLEEYAKQLNIKYHDRLELLKNSDILKMFEHRINAVQKELAHFE QVKKFTLLSQAFSIKLGEITPTLKLRRKVILERYRKQIEAMYHSQEA
Sequences:
>Translated_607_residues MKIKNRVNMNLDLHFVHRIQQQAKTRTNMTALRYKEHGLWRDISWKNFQEQLNQLSRALLAHNIDVQDKIAIFAHNMERW TIVDIATLQIRAITVPIYATNTAQQAEFILNHADVKILFVGDQEQYDQTLEIAHHCPKLQKIVAMKSTIQLQQDPLSCTW ESFIKTGSNAQQDELTQRLNQKQLSDLFTIIYTSGTTGEPKGVMLDYANLAHQLETHDLSLNVTDQDISLSFLPFSHIFE RAWAAYILHRGAILCYLEDTNQVRSALTEIRPTLMCAVPRFYEKIYAAVLDKVQKAPKLRQIMFHWAISVGQKYFDLRAN NKAIPFLLKKQFALADKLVLSKLRQLLGGRIKMMPCGGAKLEPAIGLFFHAIGINIKLGYGMTETTATVSCWHDFQFNPN SIGTLMPKAEVKIGENNEILVRGGMVMKGYYKKPEETAQAFTEDGFLKTGDAGEFDEQGNLFITDRIKELMKTSNGKYIA PQYIESKIGKDKFIEQIAIIADAKKYVSALIVPCFDSLEEYAKQLNIKYHDRLELLKNSDILKMFEHRINAVQKELAHFE QVKKFTLLSQAFSIKLGEITPTLKLRRKVILERYRKQIEAMYHSQEA >Mature_607_residues MKIKNRVNMNLDLHFVHRIQQQAKTRTNMTALRYKEHGLWRDISWKNFQEQLNQLSRALLAHNIDVQDKIAIFAHNMERW TIVDIATLQIRAITVPIYATNTAQQAEFILNHADVKILFVGDQEQYDQTLEIAHHCPKLQKIVAMKSTIQLQQDPLSCTW ESFIKTGSNAQQDELTQRLNQKQLSDLFTIIYTSGTTGEPKGVMLDYANLAHQLETHDLSLNVTDQDISLSFLPFSHIFE RAWAAYILHRGAILCYLEDTNQVRSALTEIRPTLMCAVPRFYEKIYAAVLDKVQKAPKLRQIMFHWAISVGQKYFDLRAN NKAIPFLLKKQFALADKLVLSKLRQLLGGRIKMMPCGGAKLEPAIGLFFHAIGINIKLGYGMTETTATVSCWHDFQFNPN SIGTLMPKAEVKIGENNEILVRGGMVMKGYYKKPEETAQAFTEDGFLKTGDAGEFDEQGNLFITDRIKELMKTSNGKYIA PQYIESKIGKDKFIEQIAIIADAKKYVSALIVPCFDSLEEYAKQLNIKYHDRLELLKNSDILKMFEHRINAVQKELAHFE QVKKFTLLSQAFSIKLGEITPTLKLRRKVILERYRKQIEAMYHSQEA
Specific function: Unknown
COG id: COG1022
COG function: function code I; Long-chain acyl-CoA synthetases (AMP-forming)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family
Homologues:
Organism=Homo sapiens, GI27477105, Length=644, Percent_Identity=27.1739130434783, Blast_Score=234, Evalue=1e-61, Organism=Homo sapiens, GI57165412, Length=594, Percent_Identity=28.7878787878788, Blast_Score=225, Evalue=8e-59, Organism=Homo sapiens, GI57165410, Length=591, Percent_Identity=28.595600676819, Blast_Score=225, Evalue=1e-58, Organism=Homo sapiens, GI42794756, Length=619, Percent_Identity=29.0791599353796, Blast_Score=224, Evalue=1e-58, Organism=Homo sapiens, GI83745141, Length=602, Percent_Identity=25.9136212624585, Blast_Score=224, Evalue=2e-58, Organism=Homo sapiens, GI42794760, Length=619, Percent_Identity=29.0791599353796, Blast_Score=224, Evalue=2e-58, Organism=Homo sapiens, GI42794758, Length=619, Percent_Identity=29.0791599353796, Blast_Score=224, Evalue=2e-58, Organism=Homo sapiens, GI40807491, Length=593, Percent_Identity=28.3305227655987, Blast_Score=223, Evalue=6e-58, Organism=Homo sapiens, GI42794754, Length=581, Percent_Identity=26.6781411359725, Blast_Score=183, Evalue=4e-46, Organism=Homo sapiens, GI42794752, Length=581, Percent_Identity=26.6781411359725, Blast_Score=183, Evalue=4e-46, Organism=Homo sapiens, GI12669909, Length=611, Percent_Identity=25.8592471358429, Blast_Score=174, Evalue=3e-43, Organism=Homo sapiens, GI4758332, Length=611, Percent_Identity=25.8592471358429, Blast_Score=173, Evalue=3e-43, Organism=Escherichia coli, GI145693145, Length=511, Percent_Identity=22.5048923679061, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1788107, Length=493, Percent_Identity=23.1237322515213, Blast_Score=80, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17510401, Length=593, Percent_Identity=30.5227655986509, Blast_Score=234, Evalue=9e-62, Organism=Caenorhabditis elegans, GI17556552, Length=621, Percent_Identity=26.7310789049919, Blast_Score=227, Evalue=1e-59, Organism=Caenorhabditis elegans, GI17541856, Length=596, Percent_Identity=28.8590604026846, Blast_Score=223, Evalue=2e-58, Organism=Caenorhabditis elegans, GI193204819, Length=623, Percent_Identity=27.1268057784912, Blast_Score=193, Evalue=3e-49, Organism=Caenorhabditis elegans, GI25147511, Length=616, Percent_Identity=25.8116883116883, Blast_Score=185, Evalue=8e-47, Organism=Caenorhabditis elegans, GI17553312, Length=605, Percent_Identity=27.2727272727273, Blast_Score=184, Evalue=1e-46, Organism=Caenorhabditis elegans, GI17564090, Length=543, Percent_Identity=26.3351749539595, Blast_Score=170, Evalue=2e-42, Organism=Caenorhabditis elegans, GI17558820, Length=591, Percent_Identity=23.1810490693739, Blast_Score=111, Evalue=1e-24, Organism=Caenorhabditis elegans, GI32563687, Length=482, Percent_Identity=24.2738589211618, Blast_Score=108, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17559526, Length=436, Percent_Identity=25.6880733944954, Blast_Score=99, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17531443, Length=314, Percent_Identity=29.2993630573248, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71985884, Length=348, Percent_Identity=25.5747126436782, Blast_Score=82, Evalue=9e-16, Organism=Caenorhabditis elegans, GI133901848, Length=217, Percent_Identity=27.1889400921659, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17557194, Length=137, Percent_Identity=35.036496350365, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324893, Length=454, Percent_Identity=30.6167400881057, Blast_Score=180, Evalue=7e-46, Organism=Saccharomyces cerevisiae, GI6322182, Length=476, Percent_Identity=28.781512605042, Blast_Score=177, Evalue=4e-45, Organism=Saccharomyces cerevisiae, GI6320852, Length=577, Percent_Identity=24.9566724436742, Blast_Score=176, Evalue=1e-44, Organism=Saccharomyces cerevisiae, GI6323903, Length=581, Percent_Identity=25.6454388984509, Blast_Score=171, Evalue=4e-43, Organism=Drosophila melanogaster, GI281366413, Length=613, Percent_Identity=29.5269168026101, Blast_Score=244, Evalue=2e-64, Organism=Drosophila melanogaster, GI24666501, Length=613, Percent_Identity=29.6900489396411, Blast_Score=244, Evalue=2e-64, Organism=Drosophila melanogaster, GI24666497, Length=613, Percent_Identity=29.6900489396411, Blast_Score=244, Evalue=2e-64, Organism=Drosophila melanogaster, GI17933690, Length=596, Percent_Identity=24.496644295302, Blast_Score=226, Evalue=3e-59, Organism=Drosophila melanogaster, GI19921316, Length=646, Percent_Identity=26.1609907120743, Blast_Score=214, Evalue=2e-55, Organism=Drosophila melanogaster, GI62471681, Length=608, Percent_Identity=26.6447368421053, Blast_Score=182, Evalue=5e-46, Organism=Drosophila melanogaster, GI62471687, Length=608, Percent_Identity=26.6447368421053, Blast_Score=182, Evalue=5e-46, Organism=Drosophila melanogaster, GI24586634, Length=608, Percent_Identity=26.6447368421053, Blast_Score=182, Evalue=5e-46, Organism=Drosophila melanogaster, GI22026970, Length=608, Percent_Identity=26.6447368421053, Blast_Score=182, Evalue=5e-46, Organism=Drosophila melanogaster, GI62471679, Length=608, Percent_Identity=26.6447368421053, Blast_Score=182, Evalue=5e-46, Organism=Drosophila melanogaster, GI62471683, Length=608, Percent_Identity=26.6447368421053, Blast_Score=182, Evalue=5e-46, Organism=Drosophila melanogaster, GI62471685, Length=608, Percent_Identity=26.6447368421053, Blast_Score=182, Evalue=5e-46, Organism=Drosophila melanogaster, GI24586636, Length=608, Percent_Identity=26.6447368421053, Blast_Score=182, Evalue=5e-46, Organism=Drosophila melanogaster, GI62471689, Length=608, Percent_Identity=26.6447368421053, Blast_Score=182, Evalue=6e-46, Organism=Drosophila melanogaster, GI21355181, Length=456, Percent_Identity=25, Blast_Score=103, Evalue=3e-22, Organism=Drosophila melanogaster, GI24648257, Length=144, Percent_Identity=31.9444444444444, Blast_Score=70, Evalue=6e-12, Organism=Drosophila melanogaster, GI281365686, Length=193, Percent_Identity=29.5336787564767, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI20130357, Length=137, Percent_Identity=32.8467153284672, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI24648260, Length=125, Percent_Identity=33.6, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI21358303, Length=193, Percent_Identity=29.5336787564767, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI24653035, Length=190, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): LCFH_HAEIN (P44446)
Other databases:
- EMBL: L42023 - PIR: H64041 - RefSeq: NP_438175.1 - ProteinModelPortal: P44446 - GeneID: 950897 - GenomeReviews: L42023_GR - KEGG: hin:HI0002 - NMPDR: fig|71421.1.peg.2 - TIGR: HI_0002 - HOGENOM: HBG721674 - OMA: IKMMPCG - ProtClustDB: CLSK870300 - BioCyc: HINF71421:HI_0002-MONOMER - BRENDA: 6.2.1.3 - InterPro: IPR020845 - InterPro: IPR000873
Pfam domain/function: PF00501 AMP-binding
EC number: =6.2.1.3
Molecular weight: Translated: 69695; Mature: 69695
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIKNRVNMNLDLHFVHRIQQQAKTRTNMTALRYKEHGLWRDISWKNFQEQLNQLSRALL CCCCCCCCCCEEHHHHHHHHHHHHHHCCHHHEEEHHCCCCCCCCHHHHHHHHHHHHHHHH AHNIDVQDKIAIFAHNMERWTIVDIATLQIRAITVPIYATNTAQQAEFILNHADVKILFV HCCCCCCCCEEEEEECCCCEEEEEEEEEEEEEEEEEEEECCCHHHHHHHEECCCEEEEEE GDQEQYDQTLEIAHHCPKLQKIVAMKSTIQLQQDPLSCTWESFIKTGSNAQQDELTQRLN CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCHHHHHHHHH QKQLSDLFTIIYTSGTTGEPKGVMLDYANLAHQLETHDLSLNVTDQDISLSFLPFSHIFE HHHHHHHHEEEEECCCCCCCCCEEEEHHHHHHHHHHCCEEEEEECCCCEEEECCHHHHHH RAWAAYILHRGAILCYLEDTNQVRSALTEIRPTLMCAVPRFYEKIYAAVLDKVQKAPKLR HHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH QIMFHWAISVGQKYFDLRANNKAIPFLLKKQFALADKLVLSKLRQLLGGRIKMMPCGGAK HHHHHHHHHHCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC LEPAIGLFFHAIGINIKLGYGMTETTATVSCWHDFQFNPNSIGTLMPKAEVKIGENNEIL CCHHHHHHHHHHEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEE VRGGMVMKGYYKKPEETAQAFTEDGFLKTGDAGEFDEQGNLFITDRIKELMKTSNGKYIA EECCEEEECCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCEEEHHHHHHHHHCCCCCEEC PQYIESKIGKDKFIEQIAIIADAKKYVSALIVPCFDSLEEYAKQLNIKYHDRLELLKNSD HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH ILKMFEHRINAVQKELAHFEQVKKFTLLSQAFSIKLGEITPTLKLRRKVILERYRKQIEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHH MYHSQEA HHHCCCC >Mature Secondary Structure MKIKNRVNMNLDLHFVHRIQQQAKTRTNMTALRYKEHGLWRDISWKNFQEQLNQLSRALL CCCCCCCCCCEEHHHHHHHHHHHHHHCCHHHEEEHHCCCCCCCCHHHHHHHHHHHHHHHH AHNIDVQDKIAIFAHNMERWTIVDIATLQIRAITVPIYATNTAQQAEFILNHADVKILFV HCCCCCCCCEEEEEECCCCEEEEEEEEEEEEEEEEEEEECCCHHHHHHHEECCCEEEEEE GDQEQYDQTLEIAHHCPKLQKIVAMKSTIQLQQDPLSCTWESFIKTGSNAQQDELTQRLN CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCHHHHHHHHH QKQLSDLFTIIYTSGTTGEPKGVMLDYANLAHQLETHDLSLNVTDQDISLSFLPFSHIFE HHHHHHHHEEEEECCCCCCCCCEEEEHHHHHHHHHHCCEEEEEECCCCEEEECCHHHHHH RAWAAYILHRGAILCYLEDTNQVRSALTEIRPTLMCAVPRFYEKIYAAVLDKVQKAPKLR HHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH QIMFHWAISVGQKYFDLRANNKAIPFLLKKQFALADKLVLSKLRQLLGGRIKMMPCGGAK HHHHHHHHHHCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC LEPAIGLFFHAIGINIKLGYGMTETTATVSCWHDFQFNPNSIGTLMPKAEVKIGENNEIL CCHHHHHHHHHHEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEE VRGGMVMKGYYKKPEETAQAFTEDGFLKTGDAGEFDEQGNLFITDRIKELMKTSNGKYIA EECCEEEECCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCEEEHHHHHHHHHCCCCCEEC PQYIESKIGKDKFIEQIAIIADAKKYVSALIVPCFDSLEEYAKQLNIKYHDRLELLKNSD HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH ILKMFEHRINAVQKELAHFEQVKKFTLLSQAFSIKLGEITPTLKLRRKVILERYRKQIEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHH MYHSQEA HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800