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The map label for this gene is indA

Identifier: 162447661

GI number: 162447661

Start: 838413

End: 839324

Strand: Direct

Name: indA

Synonym: ACL_0802

Alternate gene names: 162447661

Gene position: 838413-839324 (Clockwise)

Preceding gene: 162447660

Following gene: 162447662

Centisome position: 56.01

GC content: 34.54

Gene sequence:

>912_bases
ATGAACCAATTCATTGATATTCATCCAAAAGTGTTAGATGCCCTAAGATCAGGTAAGCCTGTTGTTGCGTTAGAATCTAC
GATTATTGCACATGGTATGCCTTATCCTAAAAATGTAGAAACGGCACTCAATGTTGAAAAAATAGTTGAACAAAATGGTG
CTATACCTGCGACAATTGCGATTATAGATGGTCGTATTAAAGTGGGCTTAAATCCAAATGAACTTACATCGTTAGGAAAA
CTTTCTAATGTACTCAAAGTATCCAAACGCGATATACCTTATTGTGTTATTAAAAAATACAGTGGTGCTACTACCGTTTC
AGCCACCATCCTTATTGCTGATATGGTAGGTATCAAAGTATTTGCAACAGGTGGTATCGGTGGTGTACATAAGGATGCTG
CTGCTACATTTGATATTTCAAGAGATCTTGAAGAAATTTCTGAAAAACAGGTCGCAGTTGTCTCAGCTGGGGCTAAAGCC
ATACTAGACTTAGATCTTACACTAGAATATCTTGAGACCAAGGGTGTTGAAGTAATCGGATATAAAACAAGTGAATTTCC
TGCATTCTTTTCAAATGCATCTGGTTTAAATACTACTTTTCAATTAGATGAGGCAAGTCAAATTGCACAACTCATGTATA
CAAAATGGAATATGGGTTTAAGTGGTGGTATCGTCGTTGCAAATCCAATACCTCAAAATTACGCAATAGATAAAGACAGT
TTAGATAAAGCAATTTCAAGTGCTATATTATCAGCTAAAGATAATAAAATTACTGGTAAAGAATTAACACCATACTTGCT
TAAAATGCTACATAGTAACAAGGATATAACAAGTCTTGAATCTAATATTGGTCTTATCTACAATAATGCGAAAATTGCAG
CATTGATTGCTGTTGAATTTTCTAAACTTTAG

Upstream 100 bases:

>100_bases
TATGATCAACCTTTAAAGGATGTCAAGATTAAACATATTACTGTATTAAAAAATGAGGCAAATTTAGAACCTGTAAAATA
CGTATAAAGAAGGTAAATTT

Downstream 100 bases:

>100_bases
GTTTGAATTATTACCCACTATGTGATAAAATATTCACTGAGAAGGGGAGTAGTTCCCAAAAATTAATCGTCAATACGGCT
AGTATCAGCCCGGTTAATTT

Product: indigoidine synthase A like protein

Products: NA

Alternate protein names: PsiMP glycosidase

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNQFIDIHPKVLDALRSGKPVVALESTIIAHGMPYPKNVETALNVEKIVEQNGAIPATIAIIDGRIKVGLNPNELTSLGK
LSNVLKVSKRDIPYCVIKKYSGATTVSATILIADMVGIKVFATGGIGGVHKDAAATFDISRDLEEISEKQVAVVSAGAKA
ILDLDLTLEYLETKGVEVIGYKTSEFPAFFSNASGLNTTFQLDEASQIAQLMYTKWNMGLSGGIVVANPIPQNYAIDKDS
LDKAISSAILSAKDNKITGKELTPYLLKMLHSNKDITSLESNIGLIYNNAKIAALIAVEFSKL

Sequences:

>Translated_303_residues
MNQFIDIHPKVLDALRSGKPVVALESTIIAHGMPYPKNVETALNVEKIVEQNGAIPATIAIIDGRIKVGLNPNELTSLGK
LSNVLKVSKRDIPYCVIKKYSGATTVSATILIADMVGIKVFATGGIGGVHKDAAATFDISRDLEEISEKQVAVVSAGAKA
ILDLDLTLEYLETKGVEVIGYKTSEFPAFFSNASGLNTTFQLDEASQIAQLMYTKWNMGLSGGIVVANPIPQNYAIDKDS
LDKAISSAILSAKDNKITGKELTPYLLKMLHSNKDITSLESNIGLIYNNAKIAALIAVEFSKL
>Mature_303_residues
MNQFIDIHPKVLDALRSGKPVVALESTIIAHGMPYPKNVETALNVEKIVEQNGAIPATIAIIDGRIKVGLNPNELTSLGK
LSNVLKVSKRDIPYCVIKKYSGATTVSATILIADMVGIKVFATGGIGGVHKDAAATFDISRDLEEISEKQVAVVSAGAKA
ILDLDLTLEYLETKGVEVIGYKTSEFPAFFSNASGLNTTFQLDEASQIAQLMYTKWNMGLSGGIVVANPIPQNYAIDKDS
LDKAISSAILSAKDNKITGKELTPYLLKMLHSNKDITSLESNIGLIYNNAKIAALIAVEFSKL

Specific function: Catalyzes the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil

COG id: COG2313

COG function: function code Q; Uncharacterized enzyme involved in pigment biosynthesis

Gene ontology:
GO:0008152: Pseudouridine-5'-phosphate glycosidase
GO:0016787: Pseudouridine-5'-phosphate glycosidase
GO:0016798: Pseudouridine-5'-phosphate glycosidase
GO:0046872: Pseudouridine-5'-phosphate glycosidase

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pseudouridine-5'-phosphate glycosidase family

Homologues:

Organism=Escherichia coli, GI1788490, Length=302, Percent_Identity=52.6490066225166, Blast_Score=321, Evalue=4e-89,
Organism=Caenorhabditis elegans, GI25147470, Length=302, Percent_Identity=44.3708609271523, Blast_Score=259, Evalue=1e-69,
Organism=Drosophila melanogaster, GI24580669, Length=300, Percent_Identity=50, Blast_Score=288, Evalue=2e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSUG_ACHLI (A9NGD7)

Other databases:

- EMBL:   CP000896
- RefSeq:   YP_001620793.1
- ProteinModelPortal:   A9NGD7
- SMR:   A9NGD7
- GeneID:   5803893
- GenomeReviews:   CP000896_GR
- KEGG:   acl:ACL_0802
- HOGENOM:   HBG308892
- OMA:   PATIAVM
- ProtClustDB:   CLSK862888
- BioCyc:   ALAI441768:ACL_0802-MONOMER
- HAMAP:   MF_01876
- InterPro:   IPR022830
- InterPro:   IPR007342
- PANTHER:   PTHR10584:SF1

Pfam domain/function: PF04227 Indigoidine_A; SSF110581 Indigdn_synthA

EC number: NA

Molecular weight: Translated: 32480; Mature: 32480

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQFIDIHPKVLDALRSGKPVVALESTIIAHGMPYPKNVETALNVEKIVEQNGAIPATIA
CCCCEECCHHHHHHHHCCCCEEEEEEEHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
IIDGRIKVGLNPNELTSLGKLSNVLKVSKRDIPYCVIKKYSGATTVSATILIADMVGIKV
EEECEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHEEEEHHHCEEE
FATGGIGGVHKDAAATFDISRDLEEISEKQVAVVSAGAKAILDLDLTLEYLETKGVEVIG
EEECCCCCCCCCHHHEEHHHHHHHHHHHHEEEEEECCCEEEEEEHHHHEEHHCCCEEEEE
YKTSEFPAFFSNASGLNTTFQLDEASQIAQLMYTKWNMGLSGGIVVANPIPQNYAIDKDS
EECCCCCHHHCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHH
LDKAISSAILSAKDNKITGKELTPYLLKMLHSNKDITSLESNIGLIYNNAKIAALIAVEF
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCEEEEECCEEEEEEEEEE
SKL
ECC
>Mature Secondary Structure
MNQFIDIHPKVLDALRSGKPVVALESTIIAHGMPYPKNVETALNVEKIVEQNGAIPATIA
CCCCEECCHHHHHHHHCCCCEEEEEEEHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
IIDGRIKVGLNPNELTSLGKLSNVLKVSKRDIPYCVIKKYSGATTVSATILIADMVGIKV
EEECEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHEEEEHHHCEEE
FATGGIGGVHKDAAATFDISRDLEEISEKQVAVVSAGAKAILDLDLTLEYLETKGVEVIG
EEECCCCCCCCCHHHEEHHHHHHHHHHHHEEEEEECCCEEEEEEHHHHEEHHCCCEEEEE
YKTSEFPAFFSNASGLNTTFQLDEASQIAQLMYTKWNMGLSGGIVVANPIPQNYAIDKDS
EECCCCCHHHCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHH
LDKAISSAILSAKDNKITGKELTPYLLKMLHSNKDITSLESNIGLIYNNAKIAALIAVEF
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCEEEEECCEEEEEEEEEE
SKL
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA