BacMap

Definition	Acholeplasma laidlawii PG-8A chromosome, complete genome.
Accession	NC_010163
Length	1,496,992

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The map label for this gene is vdlC [H]

Identifier: 162447513

GI number: 162447513

Start: 679655

End: 680476

Strand: Direct

Name: vdlC [H]

Synonym: ACL_0653

Alternate gene names: 162447513

Gene position: 679655-680476 (Clockwise)

Preceding gene: 162447512

Following gene: 162447514

Centisome position: 45.4

GC content: 34.91

Gene sequence:

>822_bases
ATGATGAAAAATGGTGTTGTAGTAATTACAGGTGCTAGCTCTGGTATAGGGAAAAGCACTGCTGAGTATTTAAGTAAAAA
AGGATTTACAGTATATGCACTAGCAAGACGTATGGACAAGTTAGAGGATCTTATACCGCTAGGTATTAAACCTCTATTTT
TAGATGTTACAAATGAGACGTCAATTAAGGTAGCTATTGAAGAAATATATGAAGCTGAAGGCAGAATTGATGTTTTATTT
AATAATGCTGGATACGGCTTATATGGACCGATTGAAGATGTAGACTTAAAAGATGCAAGAGATCAATTTGAAGTCAATTT
ATTTGGTCTAGCTAATATGATCAAACACGTATTACCCATCATGAGAAAACAAGGTAGTGGGAAAATAATTAATACATCCA
GTATCGGTGGTAAAGTGGCTTCACTACTTGGTGGGTGGTATCATGCTTCTAAGTTTGCATTAGAAGGCTTTTCTGATAGT
TTAAGAATTGAATTAAAGCAGTTTGGTATCCAGGTTGTCTTAATACAACCAGGACTTATTAAAACAGAATTTATGCAAAG
AACTTATGACTATGCAAGTAAAATTGATACAACCTCACCTTATCAAAACACCATTGCTCATGTCATGAAATCAGCCGAAA
GAGACTACTTAACAGGTAAGGTGGGTTCTAATCCACTTGTTGTAGCTAAAGTCGTCTACAAGGCGATTAGAGCCAAAAGA
CCTAAGACTAGATACCGTATGGGAACACTAAGCTTTATCGCATTAACAGCAAGAAAGATATTGCCTGATAAATGGTTAGA
TTATATCTTATTAAAAAGATAG

Upstream 100 bases:

>100_bases
GCAGTTATTTTAAATAGTATAGAAAAATTTGGATCACTAAAGAAGCCTAATCAATAGATTAAGCTTCTTTTTTTGGTAAA
ATATCACTATAGAAGGTGAT

Downstream 100 bases:

>100_bases
GAGATATGAAATGAAAAAGTTAACGCCAATACAAAAAAAAGTAGCACTGGAAAATGGTACAGAACCACCATTTGATAATG
CATACTGGAATAATTTTGAT

Product: short-chain dehydrogenase/reductase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MMKNGVVVITGASSGIGKSTAEYLSKKGFTVYALARRMDKLEDLIPLGIKPLFLDVTNETSIKVAIEEIYEAEGRIDVLF
NNAGYGLYGPIEDVDLKDARDQFEVNLFGLANMIKHVLPIMRKQGSGKIINTSSIGGKVASLLGGWYHASKFALEGFSDS
LRIELKQFGIQVVLIQPGLIKTEFMQRTYDYASKIDTTSPYQNTIAHVMKSAERDYLTGKVGSNPLVVAKVVYKAIRAKR
PKTRYRMGTLSFIALTARKILPDKWLDYILLKR

Sequences:

>Translated_273_residues
MMKNGVVVITGASSGIGKSTAEYLSKKGFTVYALARRMDKLEDLIPLGIKPLFLDVTNETSIKVAIEEIYEAEGRIDVLF
NNAGYGLYGPIEDVDLKDARDQFEVNLFGLANMIKHVLPIMRKQGSGKIINTSSIGGKVASLLGGWYHASKFALEGFSDS
LRIELKQFGIQVVLIQPGLIKTEFMQRTYDYASKIDTTSPYQNTIAHVMKSAERDYLTGKVGSNPLVVAKVVYKAIRAKR
PKTRYRMGTLSFIALTARKILPDKWLDYILLKR
>Mature_273_residues
MMKNGVVVITGASSGIGKSTAEYLSKKGFTVYALARRMDKLEDLIPLGIKPLFLDVTNETSIKVAIEEIYEAEGRIDVLF
NNAGYGLYGPIEDVDLKDARDQFEVNLFGLANMIKHVLPIMRKQGSGKIINTSSIGGKVASLLGGWYHASKFALEGFSDS
LRIELKQFGIQVVLIQPGLIKTEFMQRTYDYASKIDTTSPYQNTIAHVMKSAERDYLTGKVGSNPLVVAKVVYKAIRAKR
PKTRYRMGTLSFIALTARKILPDKWLDYILLKR

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI223718074, Length=262, Percent_Identity=35.1145038167939, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI7657478, Length=266, Percent_Identity=34.9624060150376, Blast_Score=127, Evalue=8e-30,
Organism=Homo sapiens, GI40548397, Length=287, Percent_Identity=33.4494773519164, Blast_Score=121, Evalue=7e-28,
Organism=Homo sapiens, GI214010158, Length=287, Percent_Identity=33.4494773519164, Blast_Score=121, Evalue=7e-28,
Organism=Homo sapiens, GI214010156, Length=287, Percent_Identity=33.4494773519164, Blast_Score=121, Evalue=7e-28,
Organism=Homo sapiens, GI22758144, Length=287, Percent_Identity=33.4494773519164, Blast_Score=121, Evalue=7e-28,
Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=36.4102564102564, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI150247226, Length=262, Percent_Identity=32.4427480916031, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI22507405, Length=290, Percent_Identity=32.7586206896552, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI19743808, Length=291, Percent_Identity=29.8969072164948, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=37.1134020618557, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI50726952, Length=282, Percent_Identity=29.4326241134752, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI44680136, Length=183, Percent_Identity=32.2404371584699, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI44680133, Length=183, Percent_Identity=32.2404371584699, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI17738292, Length=183, Percent_Identity=32.2404371584699, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI157739938, Length=192, Percent_Identity=28.6458333333333, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI119392083, Length=263, Percent_Identity=27.7566539923954, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4504503, Length=286, Percent_Identity=27.972027972028, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI109715829, Length=202, Percent_Identity=28.2178217821782, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI32455239, Length=195, Percent_Identity=32.3076923076923, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI5031765, Length=195, Percent_Identity=32.3076923076923, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI40254992, Length=184, Percent_Identity=29.8913043478261, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI4503817, Length=182, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI7705855, Length=189, Percent_Identity=31.7460317460317, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI209862901, Length=242, Percent_Identity=26.8595041322314, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI19923983, Length=242, Percent_Identity=26.8595041322314, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI32483357, Length=190, Percent_Identity=29.4736842105263, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI66933014, Length=165, Percent_Identity=32.7272727272727, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7705925, Length=195, Percent_Identity=30.2564102564103, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI59889578, Length=149, Percent_Identity=31.5436241610738, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI225579078, Length=217, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI4758504, Length=243, Percent_Identity=29.2181069958848, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI19923817, Length=203, Percent_Identity=24.6305418719212, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1786701, Length=265, Percent_Identity=32.8301886792453, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI87082100, Length=235, Percent_Identity=31.063829787234, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787335, Length=228, Percent_Identity=30.2631578947368, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787820, Length=207, Percent_Identity=32.8502415458937, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082160, Length=196, Percent_Identity=32.1428571428571, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788459, Length=185, Percent_Identity=31.3513513513514, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786812, Length=182, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1790717, Length=184, Percent_Identity=31.5217391304348, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787526, Length=193, Percent_Identity=29.5336787564767, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789057, Length=206, Percent_Identity=28.1553398058252, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=204, Percent_Identity=39.2156862745098, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI71997402, Length=204, Percent_Identity=38.2352941176471, Blast_Score=107, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI115534660, Length=285, Percent_Identity=25.6140350877193, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17557780, Length=290, Percent_Identity=27.5862068965517, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17560332, Length=197, Percent_Identity=31.9796954314721, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=193, Percent_Identity=30.5699481865285, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI32563809, Length=286, Percent_Identity=25.1748251748252, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71994600, Length=190, Percent_Identity=30, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=193, Percent_Identity=30.0518134715026, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17507613, Length=286, Percent_Identity=25.1748251748252, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193210355, Length=278, Percent_Identity=27.6978417266187, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=197, Percent_Identity=31.9796954314721, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=193, Percent_Identity=30.0518134715026, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=210, Percent_Identity=32.8571428571429, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=259, Percent_Identity=27.027027027027, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=26.4367816091954, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=191, Percent_Identity=30.3664921465969, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538182, Length=240, Percent_Identity=28.75, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71997099, Length=247, Percent_Identity=30.7692307692308, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=195, Percent_Identity=30.2564102564103, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=193, Percent_Identity=27.979274611399, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=191, Percent_Identity=30.8900523560209, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=195, Percent_Identity=29.2307692307692, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=266, Percent_Identity=23.6842105263158, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=195, Percent_Identity=28.2051282051282, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=195, Percent_Identity=28.7179487179487, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=199, Percent_Identity=28.643216080402, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=193, Percent_Identity=28.4974093264249, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=196, Percent_Identity=29.0816326530612, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=193, Percent_Identity=29.5336787564767, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=191, Percent_Identity=26.7015706806283, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=190, Percent_Identity=42.6315789473684, Blast_Score=123, Evalue=3e-29,
Organism=Saccharomyces cerevisiae, GI6322067, Length=189, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=4e-21,
Organism=Saccharomyces cerevisiae, GI6322227, Length=198, Percent_Identity=28.7878787878788, Blast_Score=66, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6322226, Length=187, Percent_Identity=27.807486631016, Blast_Score=65, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6322861, Length=195, Percent_Identity=31.2820512820513, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21358495, Length=193, Percent_Identity=37.3056994818653, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI21357041, Length=193, Percent_Identity=33.6787564766839, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI28571387, Length=199, Percent_Identity=36.6834170854271, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24643142, Length=198, Percent_Identity=30.3030303030303, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24580925, Length=202, Percent_Identity=31.1881188118812, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=30.5418719211823, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI28571526, Length=192, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24651139, Length=208, Percent_Identity=31.25, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24641232, Length=209, Percent_Identity=31.5789473684211, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI23397609, Length=188, Percent_Identity=32.4468085106383, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21356301, Length=182, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=29.8913043478261, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24648944, Length=225, Percent_Identity=28.8888888888889, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17737361, Length=248, Percent_Identity=27.4193548387097, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21355319, Length=195, Percent_Identity=29.2307692307692, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24641388, Length=202, Percent_Identity=31.1881188118812, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24640442, Length=189, Percent_Identity=30.1587301587302, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648693, Length=199, Percent_Identity=31.1557788944724, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21355889, Length=199, Percent_Identity=31.1557788944724, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24644339, Length=190, Percent_Identity=30.5263157894737, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24663911, Length=196, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007234, Length=201, Percent_Identity=30.8457711442786, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281364892, Length=169, Percent_Identity=30.1775147928994, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24581726, Length=179, Percent_Identity=25.6983240223464, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24639444, Length=192, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30422; Mature: 30422

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKNGVVVITGASSGIGKSTAEYLSKKGFTVYALARRMDKLEDLIPLGIKPLFLDVTNET
CCCCCEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
SIKVAIEEIYEAEGRIDVLFNNAGYGLYGPIEDVDLKDARDQFEVNLFGLANMIKHVLPI
EEEEHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHH
MRKQGSGKIINTSSIGGKVASLLGGWYHASKFALEGFSDSLRIELKQFGIQVVLIQPGLI
HHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCEEEEEECCCCH
KTEFMQRTYDYASKIDTTSPYQNTIAHVMKSAERDYLTGKVGSNPLVVAKVVYKAIRAKR
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHCCC
PKTRYRMGTLSFIALTARKILPDKWLDYILLKR
CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCC
>Mature Secondary Structure
MMKNGVVVITGASSGIGKSTAEYLSKKGFTVYALARRMDKLEDLIPLGIKPLFLDVTNET
CCCCCEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
SIKVAIEEIYEAEGRIDVLFNNAGYGLYGPIEDVDLKDARDQFEVNLFGLANMIKHVLPI
EEEEHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHH
MRKQGSGKIINTSSIGGKVASLLGGWYHASKFALEGFSDSLRIELKQFGIQVVLIQPGLI
HHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCEEEEEECCCCH
KTEFMQRTYDYASKIDTTSPYQNTIAHVMKSAERDYLTGKVGSNPLVVAKVVYKAIRAKR
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHCCC
PKTRYRMGTLSFIALTARKILPDKWLDYILLKR
CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139899; 9252185 [H]