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The map label for this gene is rbfA [H]

Identifier: 162447187

GI number: 162447187

Start: 330078

End: 330425

Strand: Direct

Name: rbfA [H]

Synonym: ACL_0321

Alternate gene names: 162447187

Gene position: 330078-330425 (Clockwise)

Preceding gene: 162447186

Following gene: 162447190

Centisome position: 22.05

GC content: 27.59

Gene sequence:

>348_bases
ATGAGTATTAATGTCGATCGTTTAGCTTCAAGAATCTTTAGAGAATTAGTTCATATCGTAAATGATGTGATTAAAAACAC
TCAAATTGGTTATATTACACTTACAGAAACTAAAGTCACTAAAGATAAAAGTTACTGTTATGTTTACTACACCATCATTG
ATGATAGTGTAGAAGCCAAAAAGAAAGTTCAAGATCTTTTAGATGCAGGTAAAAAAGAAATTCGTATGAAGTTAGCATCT
AAAGTTAACGACATTCGAAAAATTCCTGATTTAGTCTTTAAATATGATGAAGCATTAGCTTATGGTAATCATATTGATAA
ATTACTTTCGGATATCAATAAAAATTAA

Upstream 100 bases:

>100_bases
AAGGATTTGAATTCGGCTTTAGCGTTGAAAACTACAACGATTTAAAAGAAGGTGACGTGATTGAAGCGTCTATTGAAAGA
GAAGTGGAGGTAAATTAATT

Downstream 100 bases:

>100_bases
TAATGAAAAATGCGAGTACTTAAATTAAAGTACTCGCATTTTTATTATAGGACAGGATGATTTAATGTATAAGTTTCTGT
AACCACTTTAGTCTCACCAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MSINVDRLASRIFRELVHIVNDVIKNTQIGYITLTETKVTKDKSYCYVYYTIIDDSVEAKKKVQDLLDAGKKEIRMKLAS
KVNDIRKIPDLVFKYDEALAYGNHIDKLLSDINKN

Sequences:

>Translated_115_residues
MSINVDRLASRIFRELVHIVNDVIKNTQIGYITLTETKVTKDKSYCYVYYTIIDDSVEAKKKVQDLLDAGKKEIRMKLAS
KVNDIRKIPDLVFKYDEALAYGNHIDKLLSDINKN
>Mature_114_residues
SINVDRLASRIFRELVHIVNDVIKNTQIGYITLTETKVTKDKSYCYVYYTIIDDSVEAKKKVQDLLDAGKKEIRMKLASK
VNDIRKIPDLVFKYDEALAYGNHIDKLLSDINKN

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:
GO:0006364: Ribosome-binding factor A

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13298; Mature: 13166

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINVDRLASRIFRELVHIVNDVIKNTQIGYITLTETKVTKDKSYCYVYYTIIDDSVEAK
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEECCCCEEEEEEEEECCCHHHH
KKVQDLLDAGKKEIRMKLASKVNDIRKIPDLVFKYDEALAYGNHIDKLLSDINKN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SINVDRLASRIFRELVHIVNDVIKNTQIGYITLTETKVTKDKSYCYVYYTIIDDSVEAK
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEECCCCEEEEEEEEECCCHHHH
KKVQDLLDAGKKEIRMKLASKVNDIRKIPDLVFKYDEALAYGNHIDKLLSDINKN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA