| Definition | Acholeplasma laidlawii PG-8A chromosome, complete genome. |
|---|---|
| Accession | NC_010163 |
| Length | 1,496,992 |
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The map label for this gene is ybbD [H]
Identifier: 162447148
GI number: 162447148
Start: 292002
End: 293573
Strand: Direct
Name: ybbD [H]
Synonym: ACL_0280
Alternate gene names: 162447148
Gene position: 292002-293573 (Clockwise)
Preceding gene: 162447147
Following gene: 162447149
Centisome position: 19.51
GC content: 32.89
Gene sequence:
>1572_bases ATGAAAAAATTTGACATTAATAAATTAACAACCCAAGAAAAAATTGGACAATTAATCGTTGCAGGCTTCCATGGTACAAC TGTTGGACCAGAAATTGAAAATTTAATTAGAGAATATAAAGTAGGTAACATCCTATTATTCTCAAGAAATATTGAGTCTG CAGCACAATTATTTAAATTAAATCAAGATTTACAAAAAATCGCGATGGAAACATTTGGTATTCCTTTATATATTACTATC GATCAAGAAGGTGGTATGGTTACACGAATTTTTGAAGATGGTACATTCTTCCCTGGTGCAATGACAATTGCAGCAACAAA CAATGTTGAGTACGCATATAAAATAGGTGACTTAATGGGTAAAGAATTAATCGATCTTGGTATCAATATGGATTTAGCAC CTGTACTTGATGTGAATAATAACCCTAAAAACCCAGTCATTGGTGTAAGAAGTTTTTCGGATGATCCAGATAAAGTAGCT TTATTTGGTAATGCAAACATTAGAGGTTTACAAAACCACGTTGTTGCAACCGCTAAACACTTCCCAGGTCACGGTGATAC ACATGTGGACTCACACTTAGCATTACCAAAAGTTGAAAAACCATTAAATGAATTAGAAAAATTTGAATTCAAACCATTTA AAGCGGCAATCAATGATGGACTACATGCAATTATGTCAGCACACATTAACTTTACACATCTAACTGAAGATGGATTACCA GTGACATTATCTAAACGTGCATTAACAGGTTTACTACGTGAAGAAATGGGCTTTGAAGGTTTAATTATTACAGATGGTAT CGAAATGAAAGCTATCCATGATAATTATGGCACCATCGAAGCGACATTAAAAACAGTAAACGCTGGTGCAAACTTGGTAT GTATCTGTCATGATTTACCTTACCAAATTGGTGCTTCTGATCGCTTTAATAAAGCATTAGAAACAGGTGAGTTAACTATG GATACACTAAATGAGCGTGTAGCACGTATCTTAACATACAAAGAGAAATTAAATGTAGACTTAACACGTACTTATGAAGA TGTTAAAGAAAATGTAGAATCTATAGAATCTAAGGCTTTTGCTAGACAAGTTGTAGAAGAAGCAGTGACCTTAATTAAGG GTGAAACTTTCAAACAACATGGTAAAACTTTAGTTATTTCTACAAACCCTCAAGCAACTTCGATTGCTGATGAAGATTCA CATAATTCTAAATTAGGACGTCGCATTAGAGAAGCATTTGCAAACTTTGAAGTGATTGAAACTAAAGTTAAACCAACTGA AGTTGAAATTGCTGACATCGTTTCAATAGCAAGCGCATTTGATCAAATCGTTTATACATCATATAACGGTAATGTCTATC AAACACAAATCCAATTAATTGATGCATTAAGCGCATTAAATAAGGATTTACATGTCTTAGCACTTAGAAATCCATATGAT TTATATTACACAAAAAATATTAAAAACTATGTTGCCTTTTATGAGTACACACCAAACTCAATCGAAGCAGTTGTTAAATA CTTAAAAGGTCAATTAAAACCACAAGGAGTTTCACCGATACGTTATGAATAA
Upstream 100 bases:
>100_bases GATAATAAGTTAAAAACAAATGTTGATTTAGACCTCATTTTTGATGGGTTTAAACAGGATGAAAAAACTTTTGAGCAATC AATTAGGAGGTTTAAATTAT
Downstream 100 bases:
>100_bases AATCATTAGCATTGACGGTGGAGGCACTAAAACCCTGGGTGTGTTATATAACACATCTGGCGATGAACTTAAACGTACAA CTAAAGGATCAAGTAACTTT
Product: glycoside hydrolase family 3 protein
Products: NA
Alternate protein names: ORF1 [H]
Number of amino acids: Translated: 523; Mature: 523
Protein sequence:
>523_residues MKKFDINKLTTQEKIGQLIVAGFHGTTVGPEIENLIREYKVGNILLFSRNIESAAQLFKLNQDLQKIAMETFGIPLYITI DQEGGMVTRIFEDGTFFPGAMTIAATNNVEYAYKIGDLMGKELIDLGINMDLAPVLDVNNNPKNPVIGVRSFSDDPDKVA LFGNANIRGLQNHVVATAKHFPGHGDTHVDSHLALPKVEKPLNELEKFEFKPFKAAINDGLHAIMSAHINFTHLTEDGLP VTLSKRALTGLLREEMGFEGLIITDGIEMKAIHDNYGTIEATLKTVNAGANLVCICHDLPYQIGASDRFNKALETGELTM DTLNERVARILTYKEKLNVDLTRTYEDVKENVESIESKAFARQVVEEAVTLIKGETFKQHGKTLVISTNPQATSIADEDS HNSKLGRRIREAFANFEVIETKVKPTEVEIADIVSIASAFDQIVYTSYNGNVYQTQIQLIDALSALNKDLHVLALRNPYD LYYTKNIKNYVAFYEYTPNSIEAVVKYLKGQLKPQGVSPIRYE
Sequences:
>Translated_523_residues MKKFDINKLTTQEKIGQLIVAGFHGTTVGPEIENLIREYKVGNILLFSRNIESAAQLFKLNQDLQKIAMETFGIPLYITI DQEGGMVTRIFEDGTFFPGAMTIAATNNVEYAYKIGDLMGKELIDLGINMDLAPVLDVNNNPKNPVIGVRSFSDDPDKVA LFGNANIRGLQNHVVATAKHFPGHGDTHVDSHLALPKVEKPLNELEKFEFKPFKAAINDGLHAIMSAHINFTHLTEDGLP VTLSKRALTGLLREEMGFEGLIITDGIEMKAIHDNYGTIEATLKTVNAGANLVCICHDLPYQIGASDRFNKALETGELTM DTLNERVARILTYKEKLNVDLTRTYEDVKENVESIESKAFARQVVEEAVTLIKGETFKQHGKTLVISTNPQATSIADEDS HNSKLGRRIREAFANFEVIETKVKPTEVEIADIVSIASAFDQIVYTSYNGNVYQTQIQLIDALSALNKDLHVLALRNPYD LYYTKNIKNYVAFYEYTPNSIEAVVKYLKGQLKPQGVSPIRYE >Mature_523_residues MKKFDINKLTTQEKIGQLIVAGFHGTTVGPEIENLIREYKVGNILLFSRNIESAAQLFKLNQDLQKIAMETFGIPLYITI DQEGGMVTRIFEDGTFFPGAMTIAATNNVEYAYKIGDLMGKELIDLGINMDLAPVLDVNNNPKNPVIGVRSFSDDPDKVA LFGNANIRGLQNHVVATAKHFPGHGDTHVDSHLALPKVEKPLNELEKFEFKPFKAAINDGLHAIMSAHINFTHLTEDGLP VTLSKRALTGLLREEMGFEGLIITDGIEMKAIHDNYGTIEATLKTVNAGANLVCICHDLPYQIGASDRFNKALETGELTM DTLNERVARILTYKEKLNVDLTRTYEDVKENVESIESKAFARQVVEEAVTLIKGETFKQHGKTLVISTNPQATSIADEDS HNSKLGRRIREAFANFEVIETKVKPTEVEIADIVSIASAFDQIVYTSYNGNVYQTQIQLIDALSALNKDLHVLALRNPYD LYYTKNIKNYVAFYEYTPNSIEAVVKYLKGQLKPQGVSPIRYE
Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1787350, Length=266, Percent_Identity=33.4586466165414, Blast_Score=137, Evalue=2e-33, Organism=Escherichia coli, GI1788453, Length=424, Percent_Identity=24.2924528301887, Blast_Score=83, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: 3.2.1.52
Molecular weight: Translated: 58288; Mature: 58288
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKFDINKLTTQEKIGQLIVAGFHGTTVGPEIENLIREYKVGNILLFSRNIESAAQLFKL CCCCCCCHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH NQDLQKIAMETFGIPLYITIDQEGGMVTRIFEDGTFFPGAMTIAATNNVEYAYKIGDLMG HHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCCCCCEEEEEEECCCEEEEHHHHHHH KELIDLGINMDLAPVLDVNNNPKNPVIGVRSFSDDPDKVALFGNANIRGLQNHVVATAKH HHHHHHCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHEEEHHC FPGHGDTHVDSHLALPKVEKPLNELEKFEFKPFKAAINDGLHAIMSAHINFTHLTEDGLP CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCC VTLSKRALTGLLREEMGFEGLIITDGIEMKAIHDNYGTIEATLKTVNAGANLVCICHDLP EEEHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCEEEEEEEEECCCCCEEEEEECCC YQIGASDRFNKALETGELTMDTLNERVARILTYKEKLNVDLTRTYEDVKENVESIESKAF CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH ARQVVEEAVTLIKGETFKQHGKTLVISTNPQATSIADEDSHNSKLGRRIREAFANFEVIE HHHHHHHHHHHHCCCCHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE TKVKPTEVEIADIVSIASAFDQIVYTSYNGNVYQTQIQLIDALSALNKDLHVLALRNPYD EECCCCEEHHHHHHHHHHHHHHHEEEECCCCEEEHHHHHHHHHHHCCCCEEEEEECCCCE LYYTKNIKNYVAFYEYTPNSIEAVVKYLKGQLKPQGVSPIRYE EEEECCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MKKFDINKLTTQEKIGQLIVAGFHGTTVGPEIENLIREYKVGNILLFSRNIESAAQLFKL CCCCCCCHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH NQDLQKIAMETFGIPLYITIDQEGGMVTRIFEDGTFFPGAMTIAATNNVEYAYKIGDLMG HHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCCCCCEEEEEEECCCEEEEHHHHHHH KELIDLGINMDLAPVLDVNNNPKNPVIGVRSFSDDPDKVALFGNANIRGLQNHVVATAKH HHHHHHCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHEEEHHC FPGHGDTHVDSHLALPKVEKPLNELEKFEFKPFKAAINDGLHAIMSAHINFTHLTEDGLP CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCC VTLSKRALTGLLREEMGFEGLIITDGIEMKAIHDNYGTIEATLKTVNAGANLVCICHDLP EEEHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCEEEEEEEEECCCCCEEEEEECCC YQIGASDRFNKALETGELTMDTLNERVARILTYKEKLNVDLTRTYEDVKENVESIESKAF CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH ARQVVEEAVTLIKGETFKQHGKTLVISTNPQATSIADEDSHNSKLGRRIREAFANFEVIE HHHHHHHHHHHHCCCCHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE TKVKPTEVEIADIVSIASAFDQIVYTSYNGNVYQTQIQLIDALSALNKDLHVLALRNPYD EECCCCEEHHHHHHHHHHHHHHHEEEECCCCEEEHHHHHHHHHHHCCCCEEEEEECCCCE LYYTKNIKNYVAFYEYTPNSIEAVVKYLKGQLKPQGVSPIRYE EEEECCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8011666; 9274029; 9384377 [H]