Click here to switch to the map view.

The map label for this gene is yomE [H]

Identifier: 162447130

GI number: 162447130

Start: 259555

End: 261117

Strand: Direct

Name: yomE [H]

Synonym: ACL_0261

Alternate gene names: 162447130

Gene position: 259555-261117 (Clockwise)

Preceding gene: 162447129

Following gene: 162447131

Centisome position: 17.34

GC content: 33.78

Gene sequence:

>1563_bases
ATGAAAAAAATATTAATCACAATATTTGTATCTATCATGCTTATTTTATCTTTTACACCAAGTACTCAAGCTCAAGAACT
TTTCAGATTTGAGCACCAACTTAGTGAAAGAAGATATGTAGATGGTATCGAACACATTAAACGTGTAGGTACGATGACTT
ATGGTGAAGAAGTCACTTCACAACATTATAACTATTTAGGGGTTAACGTTAAAACAACTGATTATAATATCATAGCTAGT
GATAACTATAGACCTTATGAATGGGGTATGTCTAATTTAGTTGCACATATTGAAACTGCTAAACAAAGATTTCCTCATCT
AGATTTTGTTGGTGGTGTTAATGGTGACTTTTATGATATCAATAATACCGGCCGTGCATCTAATACACATATTGTAAATT
TTGAAGTTAAGCACCGTGGACCAACGAATGGACGAAATGCAGTAGGGTTTACAGATGATGGCGATATGGTTTATGGCACC
CCATCATTTTTAGGGCAACATTTAAACATATTAAATGAATATAAAGAACTTAAGATGAGATTAAAGATTGATCGTATCAA
TCAATTACCTCAAAATGATTTAGAAATCGCTATTTTCCACCAAAACTATGCATCAGAAATTCCTGCTGATTTTCATAAAG
TGATCATTAACGCTAGTGATTTAAAATCAGATGCAAGTGGTAACATCAACTATTCTAAAGGGGTCTTAGATTCAAAAACA
ACTGATGCTCATACAATGGAAGAAAAGACTTTTGTTTTAGTGGGTAAGGCATTCCAAGATGATAACTTAATTACCAGTTC
AGATACCATCTTAGTTCAAGAACTATTAGGAAATGGTTTTGAAAATGTTAGAAACGCTATTGGAACCGGCCAATTACTCG
TTAAAGATGGTGCTGTACAACATGCAGCATTTAAGAGTTTACCAAGTAATAATATGGCACACTTTAGACACCCTAGAACA
GCTATCGGCCAAAAAGCCGATGGTACAGTATTCTTTATTGTAGTTGATGGTAGAGATGCTTTATCAGGTAAATACGGTGT
TAAATATAGCGAATTAGGTGAACTCATGAAAATGCATGGTGCTGTCACTGCCTTTAACTTAGATGGTGGTGGTTCATCAA
CCATGTTACTAAGAAATAGTGAAACAGGTGAGTATGAGGGATTAAACACATTCTCTGATGGTCATATGCGTTCAATTTCA
AACGGTTTACTATTTGCAAGAGGAGACCTTGAACCTGTATTTGTAGAAATACCTTACCCAGATACAAGAACTCCATTTGA
AGCACCAACTGGATTATTTATAGATTCTGAAGGTGTATTCCACTTTACTGGTAATAGTGAACATATGGAATATGTGTTAA
AAATCAATGGTAGAGAACAATATTTAACAAAAGAAACAATTTCTTTACTACTTGCACCTGGGCAACATGAAATTCAAGTT
CGTGTTAAAGGTAATGCTGAATATTCTACCTCACCATTTAGTGAATCTTACACATACAATGTACACAAAAATGATGTAAA
AATCATTCTTGATCTCATTAGAAACATTGCTCAAGGTAATTAA

Upstream 100 bases:

>100_bases
GATATCACAGTCGGTGAAACTGTATATTTAGTGACATTAACTATCTCAAATATCGGACAAGTTTCACTTGTCTTACCGGC
ATAAGTAGGGGGCTAACTAT

Downstream 100 bases:

>100_bases
TATTAGGCATAAAAACATATTAATATTTAAACCTATCTATGCTACACTTATGCAGTAAACTATTTAAAATTTTATCTTTA
AACATATATGATGAATGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MKKILITIFVSIMLILSFTPSTQAQELFRFEHQLSERRYVDGIEHIKRVGTMTYGEEVTSQHYNYLGVNVKTTDYNIIAS
DNYRPYEWGMSNLVAHIETAKQRFPHLDFVGGVNGDFYDINNTGRASNTHIVNFEVKHRGPTNGRNAVGFTDDGDMVYGT
PSFLGQHLNILNEYKELKMRLKIDRINQLPQNDLEIAIFHQNYASEIPADFHKVIINASDLKSDASGNINYSKGVLDSKT
TDAHTMEEKTFVLVGKAFQDDNLITSSDTILVQELLGNGFENVRNAIGTGQLLVKDGAVQHAAFKSLPSNNMAHFRHPRT
AIGQKADGTVFFIVVDGRDALSGKYGVKYSELGELMKMHGAVTAFNLDGGGSSTMLLRNSETGEYEGLNTFSDGHMRSIS
NGLLFARGDLEPVFVEIPYPDTRTPFEAPTGLFIDSEGVFHFTGNSEHMEYVLKINGREQYLTKETISLLLAPGQHEIQV
RVKGNAEYSTSPFSESYTYNVHKNDVKIILDLIRNIAQGN

Sequences:

>Translated_520_residues
MKKILITIFVSIMLILSFTPSTQAQELFRFEHQLSERRYVDGIEHIKRVGTMTYGEEVTSQHYNYLGVNVKTTDYNIIAS
DNYRPYEWGMSNLVAHIETAKQRFPHLDFVGGVNGDFYDINNTGRASNTHIVNFEVKHRGPTNGRNAVGFTDDGDMVYGT
PSFLGQHLNILNEYKELKMRLKIDRINQLPQNDLEIAIFHQNYASEIPADFHKVIINASDLKSDASGNINYSKGVLDSKT
TDAHTMEEKTFVLVGKAFQDDNLITSSDTILVQELLGNGFENVRNAIGTGQLLVKDGAVQHAAFKSLPSNNMAHFRHPRT
AIGQKADGTVFFIVVDGRDALSGKYGVKYSELGELMKMHGAVTAFNLDGGGSSTMLLRNSETGEYEGLNTFSDGHMRSIS
NGLLFARGDLEPVFVEIPYPDTRTPFEAPTGLFIDSEGVFHFTGNSEHMEYVLKINGREQYLTKETISLLLAPGQHEIQV
RVKGNAEYSTSPFSESYTYNVHKNDVKIILDLIRNIAQGN
>Mature_520_residues
MKKILITIFVSIMLILSFTPSTQAQELFRFEHQLSERRYVDGIEHIKRVGTMTYGEEVTSQHYNYLGVNVKTTDYNIIAS
DNYRPYEWGMSNLVAHIETAKQRFPHLDFVGGVNGDFYDINNTGRASNTHIVNFEVKHRGPTNGRNAVGFTDDGDMVYGT
PSFLGQHLNILNEYKELKMRLKIDRINQLPQNDLEIAIFHQNYASEIPADFHKVIINASDLKSDASGNINYSKGVLDSKT
TDAHTMEEKTFVLVGKAFQDDNLITSSDTILVQELLGNGFENVRNAIGTGQLLVKDGAVQHAAFKSLPSNNMAHFRHPRT
AIGQKADGTVFFIVVDGRDALSGKYGVKYSELGELMKMHGAVTAFNLDGGGSSTMLLRNSETGEYEGLNTFSDGHMRSIS
NGLLFARGDLEPVFVEIPYPDTRTPFEAPTGLFIDSEGVFHFTGNSEHMEYVLKINGREQYLTKETISLLLAPGQHEIQV
RVKGNAEYSTSPFSESYTYNVHKNDVKIILDLIRNIAQGN

Specific function: Unknown

COG id: COG4632

COG function: function code G; Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018711
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF09992 DUF2233 [H]

EC number: NA

Molecular weight: Translated: 58132; Mature: 58132

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILITIFVSIMLILSFTPSTQAQELFRFEHQLSERRYVDGIEHIKRVGTMTYGEEVTS
CCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
QHYNYLGVNVKTTDYNIIASDNYRPYEWGMSNLVAHIETAKQRFPHLDFVGGVNGDFYDI
CCCEEEEEEEEECCEEEEECCCCCCHHHCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEC
NNTGRASNTHIVNFEVKHRGPTNGRNAVGFTDDGDMVYGTPSFLGQHLNILNEYKELKMR
CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHE
LKIDRINQLPQNDLEIAIFHQNYASEIPADFHKVIINASDLKSDASGNINYSKGVLDSKT
EEEHHHHCCCCCCCEEEEEECCHHHHCCCCHHHHEEEHHHCCCCCCCCCEECCCCCCCCC
TDAHTMEEKTFVLVGKAFQDDNLITSSDTILVQELLGNGFENVRNAIGTGQLLVKDGAVQ
CCCHHHCCCEEEEEEECCCCCCEEECCCHHHHHHHHCCCHHHHHHHCCCCEEEEECCCHH
HAAFKSLPSNNMAHFRHPRTAIGQKADGTVFFIVVDGRDALSGKYGVKYSELGELMKMHG
HHHHHCCCCCCCCHHCCCHHHHCCCCCCEEEEEEECCCHHCCCCCCCCHHHHHHHHHHCC
AVTAFNLDGGGSSTMLLRNSETGEYEGLNTFSDGHMRSISNGLLFARGDLEPVFVEIPYP
CEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCEEEEECCCCEEEEECCCC
DTRTPFEAPTGLFIDSEGVFHFTGNSEHMEYVLKINGREQYLTKETISLLLAPGQHEIQV
CCCCCCCCCCCEEEECCCEEEEECCCCCEEEEEEECCCHHHHHHHHHHEEECCCCEEEEE
RVKGNAEYSTSPFSESYTYNVHKNDVKIILDLIRNIAQGN
EEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKILITIFVSIMLILSFTPSTQAQELFRFEHQLSERRYVDGIEHIKRVGTMTYGEEVTS
CCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
QHYNYLGVNVKTTDYNIIASDNYRPYEWGMSNLVAHIETAKQRFPHLDFVGGVNGDFYDI
CCCEEEEEEEEECCEEEEECCCCCCHHHCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEC
NNTGRASNTHIVNFEVKHRGPTNGRNAVGFTDDGDMVYGTPSFLGQHLNILNEYKELKMR
CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHE
LKIDRINQLPQNDLEIAIFHQNYASEIPADFHKVIINASDLKSDASGNINYSKGVLDSKT
EEEHHHHCCCCCCCEEEEEECCHHHHCCCCHHHHEEEHHHCCCCCCCCCEECCCCCCCCC
TDAHTMEEKTFVLVGKAFQDDNLITSSDTILVQELLGNGFENVRNAIGTGQLLVKDGAVQ
CCCHHHCCCEEEEEEECCCCCCEEECCCHHHHHHHHCCCHHHHHHHCCCCEEEEECCCHH
HAAFKSLPSNNMAHFRHPRTAIGQKADGTVFFIVVDGRDALSGKYGVKYSELGELMKMHG
HHHHHCCCCCCCCHHCCCHHHHCCCCCCEEEEEEECCCHHCCCCCCCCHHHHHHHHHHCC
AVTAFNLDGGGSSTMLLRNSETGEYEGLNTFSDGHMRSISNGLLFARGDLEPVFVEIPYP
CEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCEEEEECCCCEEEEECCCC
DTRTPFEAPTGLFIDSEGVFHFTGNSEHMEYVLKINGREQYLTKETISLLLAPGQHEIQV
CCCCCCCCCCCEEEECCCEEEEECCCCCEEEEEEECCCHHHHHHHHHHEEECCCCEEEEE
RVKGNAEYSTSPFSESYTYNVHKNDVKIILDLIRNIAQGN
EEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]