Click here to switch to the map view.

The map label for this gene is ygjR [H]

Identifier: 162421305

GI number: 162421305

Start: 1134690

End: 1135685

Strand: Direct

Name: ygjR [H]

Synonym: YpAngola_A1098

Alternate gene names: 162421305

Gene position: 1134690-1135685 (Clockwise)

Preceding gene: 162421725

Following gene: 162420904

Centisome position: 25.19

GC content: 47.49

Gene sequence:

>996_bases
ATGATTCGCTTCGCTGTTATTGGCACCAATTGGATCACCGCACGCTTTGTCGATGCTGCCCACGAAAGTGGCAAAATGAA
ACTGGTAGCCGTTTACTCCCGCAAGCTGGACCAGGCTCAGACTTTTGGCGATGATTATCACGTCACTGACTGTTTTGATA
ATTTGGAAGCCTTAGCCGCAAGTGATTTGATTGATGCGGTGTATATCGCCAGCCCGAATGCCTTGCATTATTCTCAAGCC
AAACTCTTCCTTAGCCATAAAAAGCACGTTATTTGCGAAAAGTCGCTAGCATCGAATCTGGCAGAGGTAGAGTCTCTGAT
CGCTTGCGCCCACCAGCATCAGGTGGTGCTCTTTGAGGCCTTTAAAACGGCTTATCTCCCCAACTTTATACAACTACAGC
AAGCGCTACCGCGTGTGGGGAAATTACGTAAAGCCTTTATTAACTTCTGCCAATATTCCTCTCGTTATCAGCGCTATTTG
AACGGCGAAAATCCCAATACCTTTAATCCCGCTTTTTCTAATGGTTCAATCATGGATATTGGCTATTACTGTCTGGCCAG
CGCCCTGGCGTTATGGGGAGAACCCAAATCGGTGTGGGCAAGCGCAAGTTTACTCCCAAGCGGTGTCGATGCTCACGGTA
CGGTCAGTCTGAATTACGGTGATTTTGATGTCATTATCATCCACTCAAAAGTCAGCCAATCGGATATTCCCAGTGAAATT
CAGGGAGAAGATGGCTCGTTAGTCATTGAAAGTATTTCTGAATGCTTATCCGTGGCCTTCACGCCAAGAGGAAGCCATTC
ACAAGACCTGACGCAACCACAGCATATTAATACCATGCTGTATGAAGCAGAGGCCTTTGCCCGTTTGGTGGAGAATAATC
GGGTGGATCACGATGGCTTACACCTGTCATTACTGACGTCACGCATTCAAACAGAAATCCGCCGCCAGACGGGTGTTATA
TTCCCGGCAAATACTCAATACCCCGCCGCGAGTTAA

Upstream 100 bases:

>100_bases
CGTAATAATCTGACGGCTCAACCTGTTTTTCTTCTACCCGTTTTTCTTTTACTGGTTTTTCTTCTACGTGCTTTTATTTT
ATAGGAATGGAGTTAACGAT

Downstream 100 bases:

>100_bases
TGTTTCGTTTAAAGACTGTTTGCAGATATCGGTGCAAAACAGCAACCAACAAATAAAAGGTTGCAATAAAGCAAGCGGTT
AATAAAGCATCTAATCACTT

Product: Gfo/Idh/MocA family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MIRFAVIGTNWITARFVDAAHESGKMKLVAVYSRKLDQAQTFGDDYHVTDCFDNLEALAASDLIDAVYIASPNALHYSQA
KLFLSHKKHVICEKSLASNLAEVESLIACAHQHQVVLFEAFKTAYLPNFIQLQQALPRVGKLRKAFINFCQYSSRYQRYL
NGENPNTFNPAFSNGSIMDIGYYCLASALALWGEPKSVWASASLLPSGVDAHGTVSLNYGDFDVIIIHSKVSQSDIPSEI
QGEDGSLVIESISECLSVAFTPRGSHSQDLTQPQHINTMLYEAEAFARLVENNRVDHDGLHLSLLTSRIQTEIRRQTGVI
FPANTQYPAAS

Sequences:

>Translated_331_residues
MIRFAVIGTNWITARFVDAAHESGKMKLVAVYSRKLDQAQTFGDDYHVTDCFDNLEALAASDLIDAVYIASPNALHYSQA
KLFLSHKKHVICEKSLASNLAEVESLIACAHQHQVVLFEAFKTAYLPNFIQLQQALPRVGKLRKAFINFCQYSSRYQRYL
NGENPNTFNPAFSNGSIMDIGYYCLASALALWGEPKSVWASASLLPSGVDAHGTVSLNYGDFDVIIIHSKVSQSDIPSEI
QGEDGSLVIESISECLSVAFTPRGSHSQDLTQPQHINTMLYEAEAFARLVENNRVDHDGLHLSLLTSRIQTEIRRQTGVI
FPANTQYPAAS
>Mature_331_residues
MIRFAVIGTNWITARFVDAAHESGKMKLVAVYSRKLDQAQTFGDDYHVTDCFDNLEALAASDLIDAVYIASPNALHYSQA
KLFLSHKKHVICEKSLASNLAEVESLIACAHQHQVVLFEAFKTAYLPNFIQLQQALPRVGKLRKAFINFCQYSSRYQRYL
NGENPNTFNPAFSNGSIMDIGYYCLASALALWGEPKSVWASASLLPSGVDAHGTVSLNYGDFDVIIIHSKVSQSDIPSEI
QGEDGSLVIESISECLSVAFTPRGSHSQDLTQPQHINTMLYEAEAFARLVENNRVDHDGLHLSLLTSRIQTEIRRQTGVI
FPANTQYPAAS

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=346, Percent_Identity=23.9884393063584, Blast_Score=86, Evalue=5e-17,
Organism=Escherichia coli, GI145693182, Length=325, Percent_Identity=73.2307692307692, Blast_Score=494, Evalue=1e-141,
Organism=Drosophila melanogaster, GI24581117, Length=344, Percent_Identity=27.0348837209302, Blast_Score=104, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24581115, Length=302, Percent_Identity=23.5099337748344, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24584727, Length=310, Percent_Identity=24.5161290322581, Blast_Score=68, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36663; Mature: 36663

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFAVIGTNWITARFVDAAHESGKMKLVAVYSRKLDQAQTFGDDYHVTDCFDNLEALAA
CEEEEEECCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
SDLIDAVYIASPNALHYSQAKLFLSHKKHVICEKSLASNLAEVESLIACAHQHQVVLFEA
HHHHHHHEECCCCCCCHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHCCCEEEHHH
FKTAYLPNFIQLQQALPRVGKLRKAFINFCQYSSRYQRYLNGENPNTFNPAFSNGSIMDI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHH
GYYCLASALALWGEPKSVWASASLLPSGVDAHGTVSLNYGDFDVIIIHSKVSQSDIPSEI
HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCHH
QGEDGSLVIESISECLSVAFTPRGSHSQDLTQPQHINTMLYEAEAFARLVENNRVDHDGL
CCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
HLSLLTSRIQTEIRRQTGVIFPANTQYPAAS
HHHHHHHHHHHHHHHHCCEEEECCCCCCCCC
>Mature Secondary Structure
MIRFAVIGTNWITARFVDAAHESGKMKLVAVYSRKLDQAQTFGDDYHVTDCFDNLEALAA
CEEEEEECCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
SDLIDAVYIASPNALHYSQAKLFLSHKKHVICEKSLASNLAEVESLIACAHQHQVVLFEA
HHHHHHHEECCCCCCCHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHCCCEEEHHH
FKTAYLPNFIQLQQALPRVGKLRKAFINFCQYSSRYQRYLNGENPNTFNPAFSNGSIMDI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHH
GYYCLASALALWGEPKSVWASASLLPSGVDAHGTVSLNYGDFDVIIIHSKVSQSDIPSEI
HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCHH
QGEDGSLVIESISECLSVAFTPRGSHSQDLTQPQHINTMLYEAEAFARLVENNRVDHDGL
CCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
HLSLLTSRIQTEIRRQTGVIFPANTQYPAAS
HHHHHHHHHHHHHHHHCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]