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The map label for this gene is ubiD

Identifier: 162418443

GI number: 162418443

Start: 1981508

End: 1982995

Strand: Direct

Name: ubiD

Synonym: YpAngola_A1909

Alternate gene names: 162418443

Gene position: 1981508-1982995 (Clockwise)

Preceding gene: 162420498

Following gene: 162418986

Centisome position: 43.99

GC content: 48.59

Gene sequence:

>1488_bases
ATGAAATACCGTGACTTACGTGACTTCCTCTCATTACTGGAACAGAGGGGGGAACTTAAACGCATTAGCCAGCCCATTGA
TCCTTATTTGGAAATGACAGAAATTGCCGATCGCACGTTACGTGCTGGTGGGCCTGCGTTACTTTTTGAGAACCCTAAAG
GTTACAGCATGCCCGTGTTGTGTAATCTGTTTGGCACCGCTAAGCGAGTCGCCATGGGGATGGGGCAAGAAGATGTCAGC
GCCCTGCGAGATGTTGGTAAATTATTGGCCTTCCTGAAAGAACCCGATCCCCCAAAAGGTTTCCGTGACTTATTTGATAA
GCTGCCAAAATTTAAGCAGGTATTGAATATGCCAACGAAACGCTTGAACTCGGCCCCGTGTCAGGAGCAAGTTTGGCAAG
GTGAGGATGTTGATTTAAGTCGCATCCCTGTGATGCACTGCTGGCCAGAAGATGCCGCACCACTAGTCTCTTGGGGGTTG
ACTATTACACGTGGTCCCCACAAAGAACGGCAGAATCTAGGCATCTATCGCCAGCAGGTATTGGGTAAAAACAAATTAAT
TATGCGTTGGCTATCGCATCGTGGTGGTGCGCTGGATTATCAGGAGTGGTGTGAGGCACACCCTGGTGAACGTTTTCCGG
TCGCTGTCGCCTTGGGAGCAGACCCTGCTACGATCTTAGCCGCAGTGACCCCGGTACCAGACACGCTGTCTGAATATGCC
TTTGCCGGCTTGTTACGCGGCCATAAAACGGAAGTGGTGAAGTGTCTTTCCAATGACCTTGAAGTTCCTGCAAGTGCAGA
AATTGTATTGGAAGGATATATCGAACAAGGTGATATGGCTCCGGAAGGTCCTTATGGTGATCATACGGGCTATTACAATG
AAATAGATAATTTCCCCGTGTTTACCGTCACGCATATTACACAGCGCCAAGACGCAATTTATCATTCAACCTATACGGGC
CGACCACCGGATGAACCTGCGGTAATGGGGGTGGCACTGAACGAAGTCTTTGTACCTATTTTGCAAAAGCAATTCCCGGA
AATTGTTGATTTCTACTTGCCACCAGAAGGGTGCTCATACCGGTTGGCGGTGGTAACCATCAAGAAACAATATGCAGGCC
ATGCCAAACGCGTGATGATGGGAATATGGTCGTTTTTACGCCAGTTTATGTATACCAAGTTTGTTATTGTTTGTGATGAC
GATATTAATGCTCGTGATTGGAATGATGTAATTTGGGCGATCACCACCCGGATGGACCCATCCCGCGATACGGTGTTAAT
TGAAAATACACCGATAGATTATTTGGATTTCGCCTCACCGGTTTCCGGTTTGGGATCGAAAATGGGGCTGGATGCCACCA
ACAAATGGCCAGCAGAGACTCCGCGTGAATGGGGGCGTCCAATTAAGATGGACGAAGACGTCCGTGCCCGTATTGATGCT
CTGTGGGATGAGCTGGCCATTTTCAGTGACAAAGACGCGAAACGCTAA

Upstream 100 bases:

>100_bases
TTATTTTAAGGTGAGTTTGTATTCATTTTTAACAAAAAGACAGCAACCACTATAAAGACAGCTTATAATGGCGCATCCCA
TAGCCGCCGAAATGATCAGC

Downstream 100 bases:

>100_bases
CTAGCGTCGGCTTTGTACTTGGTTTTGCATTTGATGACCCGACAGAGGGAAGGCATGACAACTTTAAGCTGTAAAGTAAC
CTCCGTAGAGGCCATTACCG

Product: 3-octaprenyl-4-hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTAKRVAMGMGQEDVS
ALRDVGKLLAFLKEPDPPKGFRDLFDKLPKFKQVLNMPTKRLNSAPCQEQVWQGEDVDLSRIPVMHCWPEDAAPLVSWGL
TITRGPHKERQNLGIYRQQVLGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAVTPVPDTLSEYA
FAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYIEQGDMAPEGPYGDHTGYYNEIDNFPVFTVTHITQRQDAIYHSTYTG
RPPDEPAVMGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGIWSFLRQFMYTKFVIVCDD
DINARDWNDVIWAITTRMDPSRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIKMDEDVRARIDA
LWDELAIFSDKDAKR

Sequences:

>Translated_495_residues
MKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTAKRVAMGMGQEDVS
ALRDVGKLLAFLKEPDPPKGFRDLFDKLPKFKQVLNMPTKRLNSAPCQEQVWQGEDVDLSRIPVMHCWPEDAAPLVSWGL
TITRGPHKERQNLGIYRQQVLGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAVTPVPDTLSEYA
FAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYIEQGDMAPEGPYGDHTGYYNEIDNFPVFTVTHITQRQDAIYHSTYTG
RPPDEPAVMGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGIWSFLRQFMYTKFVIVCDD
DINARDWNDVIWAITTRMDPSRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIKMDEDVRARIDA
LWDELAIFSDKDAKR
>Mature_495_residues
MKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTAKRVAMGMGQEDVS
ALRDVGKLLAFLKEPDPPKGFRDLFDKLPKFKQVLNMPTKRLNSAPCQEQVWQGEDVDLSRIPVMHCWPEDAAPLVSWGL
TITRGPHKERQNLGIYRQQVLGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAVTPVPDTLSEYA
FAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYIEQGDMAPEGPYGDHTGYYNEIDNFPVFTVTHITQRQDAIYHSTYTG
RPPDEPAVMGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGIWSFLRQFMYTKFVIVCDD
DINARDWNDVIWAITTRMDPSRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIKMDEDVRARIDA
LWDELAIFSDKDAKR

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=490, Percent_Identity=89.3877551020408, Blast_Score=934, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=440, Percent_Identity=26.5909090909091, Blast_Score=142, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBID_YERPA (Q1C2C1)

Other databases:

- EMBL:   CP000308
- RefSeq:   YP_653346.2
- ProteinModelPortal:   Q1C2C1
- SMR:   Q1C2C1
- STRING:   Q1C2C1
- GeneID:   4119642
- GenomeReviews:   CP000308_GR
- KEGG:   ypa:YPA_3439
- eggNOG:   COG0043
- HOGENOM:   HBG564733
- ProtClustDB:   PRK10922
- BioCyc:   YPES360102:YPA_3439-MONOMER
- HAMAP:   MF_01636
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: 4.1.1.-

Molecular weight: Translated: 55980; Mature: 55980

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYSMPVL
CCCHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
CNLFGTAKRVAMGMGQEDVSALRDVGKLLAFLKEPDPPKGFRDLFDKLPKFKQVLNMPTK
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHH
RLNSAPCQEQVWQGEDVDLSRIPVMHCWPEDAAPLVSWGLTITRGPHKERQNLGIYRQQV
HHCCCCCHHHHCCCCCCCHHCCCEEEECCCCCCHHHHCCEEEECCCCHHHHHHHHHHHHH
LGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAVTPVPDTLSEYA
HCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHEEECCCCHHHHHHH
FAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYIEQGDMAPEGPYGDHTGYYNEIDNFPV
HHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCE
FTVTHITQRQDAIYHSTYTGRPPDEPAVMGVALNEVFVPILQKQFPEIVDFYLPPEGCSY
EEEEEHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RLAVVTIKKQYAGHAKRVMMGIWSFLRQFMYTKFVIVCDDDINARDWNDVIWAITTRMDP
EEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCC
SRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIKMDEDVRARIDA
CCCEEEEECCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHH
LWDELAIFSDKDAKR
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYSMPVL
CCCHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
CNLFGTAKRVAMGMGQEDVSALRDVGKLLAFLKEPDPPKGFRDLFDKLPKFKQVLNMPTK
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHH
RLNSAPCQEQVWQGEDVDLSRIPVMHCWPEDAAPLVSWGLTITRGPHKERQNLGIYRQQV
HHCCCCCHHHHCCCCCCCHHCCCEEEECCCCCCHHHHCCEEEECCCCHHHHHHHHHHHHH
LGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAVTPVPDTLSEYA
HCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHEEECCCCHHHHHHH
FAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYIEQGDMAPEGPYGDHTGYYNEIDNFPV
HHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCE
FTVTHITQRQDAIYHSTYTGRPPDEPAVMGVALNEVFVPILQKQFPEIVDFYLPPEGCSY
EEEEEHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RLAVVTIKKQYAGHAKRVMMGIWSFLRQFMYTKFVIVCDDDINARDWNDVIWAITTRMDP
EEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCC
SRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIKMDEDVRARIDA
CCCEEEEECCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHH
LWDELAIFSDKDAKR
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA