| Definition | Geobacillus thermodenitrificans NG80-2 chromosome, complete genome. |
|---|---|
| Accession | NC_009328 |
| Length | 3,550,319 |
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The map label for this gene is secA [H]
Identifier: 162330294
GI number: 162330294
Start: 3145406
End: 3147919
Strand: Reverse
Name: secA [H]
Synonym: GTNG_3048
Alternate gene names: 162330294
Gene position: 3147919-3145406 (Counterclockwise)
Preceding gene: 138896686
Following gene: 138896684
Centisome position: 88.67
GC content: 54.69
Gene sequence:
>2514_bases ATGCTTGGAGTCTTAAAAAAGGTATTTGACCCGAACAAGCGCCAGTTGGCACGGCTTGAGAAAATCGCTGACCAAGTCGA TGCGCTCGGGCCGGAGATGGCGCGGTTGTCGGATGAACAGTTGCGGCAAAAGACCGAGGAGTTTAAAGCCCGCTACCAGC AAGGTGAATCGCTGGATGATCTGCTTGTGGAAGCGTTCGCTGTTGTGCGTGAAGGGGCGAAGCGTGTTCTCGGCTTGTAC CCATATAAAGTGCAAATTATGGGCGGTGTTGTCCTGCACGAAGGCGACATCGCTGAGATGAAAACCGGGGAAGGGAAAAC GTTGACGGCGACGATGCCGGTCTACTTAAACGCGTTGACCGGGCGCGGGGTGCATGTGGTGACCGTCAACGAATATTTGG CATCGCGCGACGCGAAAGAAATGGGCCAGCTGTACGAGTTTTTAGGGTTGACTGTCGGCCTGAACTTAAGCGGCATGTCG CGCGAGGAGAAACAGGCGGCGTACAATGCCGATATTACGTACGGGACGAACAATGAGTTCGGCTTTGACTATTTGCGCGA CAACATGGTGCTGTATAAAGAACATATCGTGCAGCGCCCGCTTTATTTTGCCGTTGTCGACGAGGTCGACTCGATTTTGA TCGATGAGGCGCGGACACCGCTCATCATTTCCGGGACGGCGCAAAAATCGACGAAGCTGTATGTGCAGGCGAACGCGTTC GTGCGCACGCTTCGCAAAGATGTCGATTATACGTATGATGAAAAATCGAAAAGCGTCCAGCTGACTGAGGAAGGGATGAA TAAAGCGGAGCGGGCGTTTGGCATCGACAACTTGTTCGATTTAAAACACGTCACGCTCAACCATCATATTCAGCTGGCGC TGCGGGCGCATGTGACGATGCAGCGTGACGTCGATTACGTCGTGCAAGACGGGAAAGTCATCATCGTCGACCCGTTCACC GGGCGTTTGATGCATGGCCGACGCTACAGCGACGGGCTTCATCAGGCCATCGAGGCGAAAGAGGGCCTCGAGATTCAAAA CGAGTCGATGACACTCGCGACGATTACGTTCCAAAACTATTTCCGCATGTATGAAAAATTGGCGGGGATGACCGGGACGG CGAAAACGGAAGAAGAGGAGTTCCGCAACATCTACAACATGCGCGTCGTTGTCATTCCGACGAACCGTCCGGTCATTCGC GAAGACCGTCCGGATTTGATTTATCGGACGATGGAGGGGAAATTCCGCGCTGTCGTCGAGGATATCGCCCAGCGCCATGC AAAAGGGCAGCCGGTGCTTGTCGGCACAGTGGCGATCGAGACGTCGGAACTGTTATCAGAGATGTTGAAAAAACGCGGTA TTCCGCATAACGTCTTAAACGCGAAAAACCATGCGAAAGAGGCCGAGATCATTGCCCAAGCGGGTCAGAAAGGCGCGGTG ACGATCGCGACGAACATGGCCGGGCGCGGGACGGACATTAAGCTCGGCGAAGGAGTCAAGGAGCTTGGCGGGCTGGCCGT CATCGGCACGGAGCGGCATGAAAGCCGGCGGATCGACAACCAGCTGCGCGGCCGTTCGGGGCGCCAAGGCGACCCGGGAG TGTCACAGTTTTACTTGTCGCTTGAAGATGAGTTGATGCGCCGCTTTGGCTCCGAGAGCCTCATGGCGATGATGGATCGG CTCGGCATGGACGATTCGCAGCCGATTCAAAGCAAAATGGTGACACGGGCGGTCGAGTCGGCGCAAAAACGTGTCGAAGG CAACAACTTTGATGCCCGTAAACAGTTGCTTCAGTATGACGACGTGTTGCGCGAACAGCGGGAAGTCATTTATCGCCAGC GCTTTGAAGTGCTCGATGCCGACAATTTGCGCGGCATTATCGAGAAAATGATCCGGTCGGTGATCGAGCGCGTCGTCAAC ACCTACACGCCGAAAGAAGACTTGCCGGAAGAGTGGAACTTGAAAGGGGTGGTCGATTACCTTAACGCCTACTTGCTTCC GGAAGGCGACGTGACGGAAGGCGACTTGCGCGGCAAAGAGCCGGAAGAGATGATCGAGCTCATCTGGGCGAAAGTCAAAG CGCGCTATGACGAGAAGGAAACGCAAATTCCGCCAGAACAAATGCGCGAATTTGAACGGGTCGTTGTGCTGCGCGCTGTC GATATGAAATGGATGAACCATATCGATGCGATGGAACAGCTCCGCCAAGGCATCCATTTGCGCGCTTACGGGCAGGTTGA CCCGCTCCGTGAATACCAGATGGAAGGCTATGCGATGTTTGAAAACATGATTGCGGCGATCGAAGAGGAAGTCGCGACGT ACATCATGAAGGCGGAAATCCATCATAACCTCGAACGCCAAGAAGTGGCGAAAGGCGAGGCGGTTCACCCGAAAGAAGAC GGTGAAGAACCGAAGAAAAAACCGATCCGCAAAGCGGTGCGCGTCGGGCGCAACGATCCGTGCCCGTGCGGAAGCGGCAA AAAATATAAACATTGTTGCGGAAGAGCGGTATAA
Upstream 100 bases:
>100_bases CAAGCCGCATCCTTTTACGCCTGCGCGATGGTTGTCACTGTACCCTCTCAAGTGATATGATTAATAAGTAAGTCCATTGA AAAAATAAGGAGCGTTTCCT
Downstream 100 bases:
>100_bases CCGTTTATAAATAATAAGAGAGGCATCGCCTCTCTTTTGAATGGCAAACGCAAATGATGCGCATACGATATTCATGATGA GGTGAGGACAACATGATCGA
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 837; Mature: 837
Protein sequence:
>837_residues MLGVLKKVFDPNKRQLARLEKIADQVDALGPEMARLSDEQLRQKTEEFKARYQQGESLDDLLVEAFAVVREGAKRVLGLY PYKVQIMGGVVLHEGDIAEMKTGEGKTLTATMPVYLNALTGRGVHVVTVNEYLASRDAKEMGQLYEFLGLTVGLNLSGMS REEKQAAYNADITYGTNNEFGFDYLRDNMVLYKEHIVQRPLYFAVVDEVDSILIDEARTPLIISGTAQKSTKLYVQANAF VRTLRKDVDYTYDEKSKSVQLTEEGMNKAERAFGIDNLFDLKHVTLNHHIQLALRAHVTMQRDVDYVVQDGKVIIVDPFT GRLMHGRRYSDGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMRVVVIPTNRPVIR EDRPDLIYRTMEGKFRAVVEDIAQRHAKGQPVLVGTVAIETSELLSEMLKKRGIPHNVLNAKNHAKEAEIIAQAGQKGAV TIATNMAGRGTDIKLGEGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLSLEDELMRRFGSESLMAMMDR LGMDDSQPIQSKMVTRAVESAQKRVEGNNFDARKQLLQYDDVLREQREVIYRQRFEVLDADNLRGIIEKMIRSVIERVVN TYTPKEDLPEEWNLKGVVDYLNAYLLPEGDVTEGDLRGKEPEEMIELIWAKVKARYDEKETQIPPEQMREFERVVVLRAV DMKWMNHIDAMEQLRQGIHLRAYGQVDPLREYQMEGYAMFENMIAAIEEEVATYIMKAEIHHNLERQEVAKGEAVHPKED GEEPKKKPIRKAVRVGRNDPCPCGSGKKYKHCCGRAV
Sequences:
>Translated_837_residues MLGVLKKVFDPNKRQLARLEKIADQVDALGPEMARLSDEQLRQKTEEFKARYQQGESLDDLLVEAFAVVREGAKRVLGLY PYKVQIMGGVVLHEGDIAEMKTGEGKTLTATMPVYLNALTGRGVHVVTVNEYLASRDAKEMGQLYEFLGLTVGLNLSGMS REEKQAAYNADITYGTNNEFGFDYLRDNMVLYKEHIVQRPLYFAVVDEVDSILIDEARTPLIISGTAQKSTKLYVQANAF VRTLRKDVDYTYDEKSKSVQLTEEGMNKAERAFGIDNLFDLKHVTLNHHIQLALRAHVTMQRDVDYVVQDGKVIIVDPFT GRLMHGRRYSDGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMRVVVIPTNRPVIR EDRPDLIYRTMEGKFRAVVEDIAQRHAKGQPVLVGTVAIETSELLSEMLKKRGIPHNVLNAKNHAKEAEIIAQAGQKGAV TIATNMAGRGTDIKLGEGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLSLEDELMRRFGSESLMAMMDR LGMDDSQPIQSKMVTRAVESAQKRVEGNNFDARKQLLQYDDVLREQREVIYRQRFEVLDADNLRGIIEKMIRSVIERVVN TYTPKEDLPEEWNLKGVVDYLNAYLLPEGDVTEGDLRGKEPEEMIELIWAKVKARYDEKETQIPPEQMREFERVVVLRAV DMKWMNHIDAMEQLRQGIHLRAYGQVDPLREYQMEGYAMFENMIAAIEEEVATYIMKAEIHHNLERQEVAKGEAVHPKED GEEPKKKPIRKAVRVGRNDPCPCGSGKKYKHCCGRAV >Mature_837_residues MLGVLKKVFDPNKRQLARLEKIADQVDALGPEMARLSDEQLRQKTEEFKARYQQGESLDDLLVEAFAVVREGAKRVLGLY PYKVQIMGGVVLHEGDIAEMKTGEGKTLTATMPVYLNALTGRGVHVVTVNEYLASRDAKEMGQLYEFLGLTVGLNLSGMS REEKQAAYNADITYGTNNEFGFDYLRDNMVLYKEHIVQRPLYFAVVDEVDSILIDEARTPLIISGTAQKSTKLYVQANAF VRTLRKDVDYTYDEKSKSVQLTEEGMNKAERAFGIDNLFDLKHVTLNHHIQLALRAHVTMQRDVDYVVQDGKVIIVDPFT GRLMHGRRYSDGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMRVVVIPTNRPVIR EDRPDLIYRTMEGKFRAVVEDIAQRHAKGQPVLVGTVAIETSELLSEMLKKRGIPHNVLNAKNHAKEAEIIAQAGQKGAV TIATNMAGRGTDIKLGEGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLSLEDELMRRFGSESLMAMMDR LGMDDSQPIQSKMVTRAVESAQKRVEGNNFDARKQLLQYDDVLREQREVIYRQRFEVLDADNLRGIIEKMIRSVIERVVN TYTPKEDLPEEWNLKGVVDYLNAYLLPEGDVTEGDLRGKEPEEMIELIWAKVKARYDEKETQIPPEQMREFERVVVLRAV DMKWMNHIDAMEQLRQGIHLRAYGQVDPLREYQMEGYAMFENMIAAIEEEVATYIMKAEIHHNLERQEVAKGEAVHPKED GEEPKKKPIRKAVRVGRNDPCPCGSGKKYKHCCGRAV
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular mo
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family [H]
Homologues:
Organism=Escherichia coli, GI1786287, Length=901, Percent_Identity=51.6093229744728, Blast_Score=873, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001650 - InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 [H]
Pfam domain/function: PF00271 Helicase_C; PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW [H]
EC number: NA
Molecular weight: Translated: 95258; Mature: 95258
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS01312 SECA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGVLKKVFDPNKRQLARLEKIADQVDALGPEMARLSDEQLRQKTEEFKARYQQGESLDD CCCHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHCCCCHHH LLVEAFAVVREGAKRVLGLYPYKVQIMGGVVLHEGDIAEMKTGEGKTLTATMPVYLNALT HHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCCHHHCCCCCCCEEEEEHHHHHHHCC GRGVHVVTVNEYLASRDAKEMGQLYEFLGLTVGLNLSGMSREEKQAAYNADITYGTNNEF CCCEEEEEHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEECCCCCC GFDYLRDNMVLYKEHIVQRPLYFAVVDEVDSILIDEARTPLIISGTAQKSTKLYVQANAF CHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEHHHH VRTLRKDVDYTYDEKSKSVQLTEEGMNKAERAFGIDNLFDLKHVTLNHHIQLALRAHVTM HHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHCCCCCHHHHHHEECCCCEEEEEHHHHHH QRDVDYVVQDGKVIIVDPFTGRLMHGRRYSDGLHQAIEAKEGLEIQNESMTLATITFQNY HHCCHHEECCCEEEEECCCCCHHHCCCCHHHHHHHHHHHHCCCEECCCCEEEEEEHHHHH FRMYEKLAGMTGTAKTEEEEFRNIYNMRVVVIPTNRPVIREDRPDLIYRTMEGKFRAVVE HHHHHHHHCCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEHHHCHHHHHHHH DIAQRHAKGQPVLVGTVAIETSELLSEMLKKRGIPHNVLNAKNHAKEAEIIAQAGQKGAV HHHHHHCCCCCEEEEEEEECHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHCCCCCCE TIATNMAGRGTDIKLGEGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLS EEEECCCCCCCCCCCCCCHHHHCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHH LEDELMRRFGSESLMAMMDRLGMDDSQPIQSKMVTRAVESAQKRVEGNNFDARKQLLQYD HHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH DVLREQREVIYRQRFEVLDADNLRGIIEKMIRSVIERVVNTYTPKEDLPEEWNLKGVVDY HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH LNAYLLPEGDVTEGDLRGKEPEEMIELIWAKVKARYDEKETQIPPEQMREFERVVVLRAV HHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHH DMKWMNHIDAMEQLRQGIHLRAYGQVDPLREYQMEGYAMFENMIAAIEEEVATYIMKAEI HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHNLERQEVAKGEAVHPKEDGEEPKKKPIRKAVRVGRNDPCPCGSGKKYKHCCGRAV HHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC >Mature Secondary Structure MLGVLKKVFDPNKRQLARLEKIADQVDALGPEMARLSDEQLRQKTEEFKARYQQGESLDD CCCHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHCCCCHHH LLVEAFAVVREGAKRVLGLYPYKVQIMGGVVLHEGDIAEMKTGEGKTLTATMPVYLNALT HHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCCHHHCCCCCCCEEEEEHHHHHHHCC GRGVHVVTVNEYLASRDAKEMGQLYEFLGLTVGLNLSGMSREEKQAAYNADITYGTNNEF CCCEEEEEHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEECCCCCC GFDYLRDNMVLYKEHIVQRPLYFAVVDEVDSILIDEARTPLIISGTAQKSTKLYVQANAF CHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEHHHH VRTLRKDVDYTYDEKSKSVQLTEEGMNKAERAFGIDNLFDLKHVTLNHHIQLALRAHVTM HHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHCCCCCHHHHHHEECCCCEEEEEHHHHHH QRDVDYVVQDGKVIIVDPFTGRLMHGRRYSDGLHQAIEAKEGLEIQNESMTLATITFQNY HHCCHHEECCCEEEEECCCCCHHHCCCCHHHHHHHHHHHHCCCEECCCCEEEEEEHHHHH FRMYEKLAGMTGTAKTEEEEFRNIYNMRVVVIPTNRPVIREDRPDLIYRTMEGKFRAVVE HHHHHHHHCCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEHHHCHHHHHHHH DIAQRHAKGQPVLVGTVAIETSELLSEMLKKRGIPHNVLNAKNHAKEAEIIAQAGQKGAV HHHHHHCCCCCEEEEEEEECHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHCCCCCCE TIATNMAGRGTDIKLGEGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLS EEEECCCCCCCCCCCCCCHHHHCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHH LEDELMRRFGSESLMAMMDRLGMDDSQPIQSKMVTRAVESAQKRVEGNNFDARKQLLQYD HHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH DVLREQREVIYRQRFEVLDADNLRGIIEKMIRSVIERVVNTYTPKEDLPEEWNLKGVVDY HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH LNAYLLPEGDVTEGDLRGKEPEEMIELIWAKVKARYDEKETQIPPEQMREFERVVVLRAV HHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHH DMKWMNHIDAMEQLRQGIHLRAYGQVDPLREYQMEGYAMFENMIAAIEEEVATYIMKAEI HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHNLERQEVAKGEAVHPKEDGEEPKKKPIRKAVRVGRNDPCPCGSGKKYKHCCGRAV HHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA