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The map label for this gene is yvyD [H]

Identifier: 138896686

GI number: 138896686

Start: 3148464

End: 3149012

Strand: Reverse

Name: yvyD [H]

Synonym: GTNG_3049

Alternate gene names: 138896686

Gene position: 3149012-3148464 (Counterclockwise)

Preceding gene: 138896687

Following gene: 162330294

Centisome position: 88.7

GC content: 48.09

Gene sequence:

>549_bases
ATGATGTATAACATTCGTGGGGAAAACATCGAAGTAACGCCAGCTTTGCGCGAGTATGTGGAGAAAAAAATCGGGAAACT
GGAGCGGTACTTTGATGACACCGATCACGTTCATGTAAACGTTAACTTGAAAGTCTACAACGATGGACAAGGAAAAATCG
AGGTGACCATTCCGATTCCGCATCTATTGTTGCGCGCGGAGGAGCGCCACGACGATATGTATGCGGCCATTGACTTAGTA
ACCGATAAATTGGAGCGGCAAATCCGCAAGCATAAAACGAAAGTCAATCGGAAGCTGCGCGACCGTGAGAAAGGAGTGAA
GTTGGCGGCTCCTGTGCCAAACGGCGCTGCTGCGGTGGAGAACGACGAGGAATTTGAAATCGTGCGCACGAAACATTTCA
GCTTAAAGCCGATGGACAGCGAAGAAGCGATTTTGCAGATGAATTTGTTAGGGCACAACTTCTTTATCTTTACGAACGCC
GAAACGAATCGGACAAACATCGTCTACCGCCGCAAAGACGGACGATACGGATTGATTGAGGCAAACTGA

Upstream 100 bases:

>100_bases
TTTCACAAAATCTTCGCAAATATTTTTGATTGAAGTCGGGGTTTAGTGGGTAATTAAAAAGTGTAGGGATCTATAGTTTG
AAAATAAGGAGTGGTCAGCA

Downstream 100 bases:

>100_bases
CACCGGTTGTTGACAAGACGCATCCCCTGCTTGTTGGGCAGGGGATGTTTCTCATGATACGGGGAGAATGTTTAGGGAAA
TATTGGTTAACGTTCGGCAG

Product: ribosomal subunit interface protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MMYNIRGENIEVTPALREYVEKKIGKLERYFDDTDHVHVNVNLKVYNDGQGKIEVTIPIPHLLLRAEERHDDMYAAIDLV
TDKLERQIRKHKTKVNRKLRDREKGVKLAAPVPNGAAAVENDEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNA
ETNRTNIVYRRKDGRYGLIEAN

Sequences:

>Translated_182_residues
MMYNIRGENIEVTPALREYVEKKIGKLERYFDDTDHVHVNVNLKVYNDGQGKIEVTIPIPHLLLRAEERHDDMYAAIDLV
TDKLERQIRKHKTKVNRKLRDREKGVKLAAPVPNGAAAVENDEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNA
ETNRTNIVYRRKDGRYGLIEAN
>Mature_182_residues
MMYNIRGENIEVTPALREYVEKKIGKLERYFDDTDHVHVNVNLKVYNDGQGKIEVTIPIPHLLLRAEERHDDMYAAIDLV
TDKLERQIRKHKTKVNRKLRDREKGVKLAAPVPNGAAAVENDEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNA
ETNRTNIVYRRKDGRYGLIEAN

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=98, Percent_Identity=42.8571428571429, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1788949, Length=100, Percent_Identity=36, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 21202; Mature: 21202

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMYNIRGENIEVTPALREYVEKKIGKLERYFDDTDHVHVNVNLKVYNDGQGKIEVTIPIP
CEEECCCCCEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCEEEEEECCH
HLLLRAEERHDDMYAAIDLVTDKLERQIRKHKTKVNRKLRDREKGVKLAAPVPNGAAAVE
HHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEECC
NDEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRTNIVYRRKDGRYGLIE
CCCCEEEEEEECCEECCCCCCHHEEEEEECCCEEEEEECCCCCCEEEEEEECCCCEEEEE
AN
CC
>Mature Secondary Structure
MMYNIRGENIEVTPALREYVEKKIGKLERYFDDTDHVHVNVNLKVYNDGQGKIEVTIPIP
CEEECCCCCEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCEEEEEECCH
HLLLRAEERHDDMYAAIDLVTDKLERQIRKHKTKVNRKLRDREKGVKLAAPVPNGAAAVE
HHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEECC
NDEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRTNIVYRRKDGRYGLIE
CCCCEEEEEEECCEECCCCCCHHEEEEEECCCEEEEEECCCCCCEEEEEEECCCCEEEEE
AN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8195064; 9384377; 1901557 [H]