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The map label for this gene is rsmE [H]

Identifier: 162149021

GI number: 162149021

Start: 3341909

End: 3342661

Strand: Reverse

Name: rsmE [H]

Synonym: GDI_3251

Alternate gene names: 162149021

Gene position: 3342661-3341909 (Counterclockwise)

Preceding gene: 162149024

Following gene: 162149020

Centisome position: 84.75

GC content: 71.58

Gene sequence:

>753_bases
ATGAAGGATTGTCCCCGTCTGTTCGCCGATCCGGCGACGCAGCCGCCGATGGAGGCGGACGCGGTGCGGGACCTGACGCC
GGGACAGGCGCATTATCTGGGAACGGTGCTGCGTCTGGGGGTGGGGGACGAGGTCGCCCTGTTCAACCCGCGCGACGGGG
AATGGCTGGCGCGCATCGAGGCGATGCGCCGCGACCGGGGGCAGGTGCGCCTGCTGCGGCAGCGGCGCGCGGCGGAGCCC
GTTGCGGGGCCGGTCCTGCTGTTCGCGCCGCTGAAGCGCGATGCGACGGACATGGTGGTGCGCATGGGTACCGAACTGGG
GGTCACACGATTCCTGCCCGTCCTGACCGAACGGACCAACACCCACCGGGTCAACGAAGCACGCCTGGAAACCATTGCCG
GCGAGGCGGCGGAGCAGTGCGAGCGCCTGGACGTGCCCGCGATCGACGCCCCCCGGCGCCTGGCCGACCGGCTGGGGGAG
TGGCCGCCCGAACGGCGTCTGTTCGTGGCGGCCGAACGCGCCGACCGGCGCGGCGGCGCGGGGGGGATCGAGGATGTCGC
CGATGGCGACGGACTGCTGATCGGACCGGAGGGCGGGTTTTCCGATGTCGAGGTCAACATGTTGCGCGCACGGCCATTTG
TCAGGATGATCTCGCTGGGCGGGCTGATCCTGCGGGCCGATACGGCCGTGGCCTGTGGCCTGTCCCTGATGGGGGCTGGC
CTGCGGCGCGTGTCTGGTGCAGGGTCGCGCTGA

Upstream 100 bases:

>100_bases
GGCTGCTATGCCCGCGTGTGATGGGGCGCCGGGGGGACGCGGTCAAGAGCCGAGGTCCCGCTGCGGCCCCGGGTTGTGTG
TCGCGTGGAGTGGTGCCGTC

Downstream 100 bases:

>100_bases
GAGCGCAGCCTCAAAAGCCTTGATGCTTACGACCCGCACGGCCTCTGACCGATCCGTTGCGTTTTTTAGGATTTTTGCAG
AAACGATGTCGAACCCCGGC

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKDCPRLFADPATQPPMEADAVRDLTPGQAHYLGTVLRLGVGDEVALFNPRDGEWLARIEAMRRDRGQVRLLRQRRAAEP
VAGPVLLFAPLKRDATDMVVRMGTELGVTRFLPVLTERTNTHRVNEARLETIAGEAAEQCERLDVPAIDAPRRLADRLGE
WPPERRLFVAAERADRRGGAGGIEDVADGDGLLIGPEGGFSDVEVNMLRARPFVRMISLGGLILRADTAVACGLSLMGAG
LRRVSGAGSR

Sequences:

>Translated_250_residues
MKDCPRLFADPATQPPMEADAVRDLTPGQAHYLGTVLRLGVGDEVALFNPRDGEWLARIEAMRRDRGQVRLLRQRRAAEP
VAGPVLLFAPLKRDATDMVVRMGTELGVTRFLPVLTERTNTHRVNEARLETIAGEAAEQCERLDVPAIDAPRRLADRLGE
WPPERRLFVAAERADRRGGAGGIEDVADGDGLLIGPEGGFSDVEVNMLRARPFVRMISLGGLILRADTAVACGLSLMGAG
LRRVSGAGSR
>Mature_250_residues
MKDCPRLFADPATQPPMEADAVRDLTPGQAHYLGTVLRLGVGDEVALFNPRDGEWLARIEAMRRDRGQVRLLRQRRAAEP
VAGPVLLFAPLKRDATDMVVRMGTELGVTRFLPVLTERTNTHRVNEARLETIAGEAAEQCERLDVPAIDAPRRLADRLGE
WPPERRLFVAAERADRRGGAGGIEDVADGDGLLIGPEGGFSDVEVNMLRARPFVRMISLGGLILRADTAVACGLSLMGAG
LRRVSGAGSR

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 27179; Mature: 27179

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDCPRLFADPATQPPMEADAVRDLTPGQAHYLGTVLRLGVGDEVALFNPRDGEWLARIE
CCCCCCHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH
AMRRDRGQVRLLRQRRAAEPVAGPVLLFAPLKRDATDMVVRMGTELGVTRFLPVLTERTN
HHHHCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHCCCC
THRVNEARLETIAGEAAEQCERLDVPAIDAPRRLADRLGEWPPERRLFVAAERADRRGGA
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEEECHHCCCCCC
GGIEDVADGDGLLIGPEGGFSDVEVNMLRARPFVRMISLGGLILRADTAVACGLSLMGAG
CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHH
LRRVSGAGSR
HHHHCCCCCC
>Mature Secondary Structure
MKDCPRLFADPATQPPMEADAVRDLTPGQAHYLGTVLRLGVGDEVALFNPRDGEWLARIE
CCCCCCHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH
AMRRDRGQVRLLRQRRAAEPVAGPVLLFAPLKRDATDMVVRMGTELGVTRFLPVLTERTN
HHHHCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHCCCC
THRVNEARLETIAGEAAEQCERLDVPAIDAPRRLADRLGEWPPERRLFVAAERADRRGGA
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEEECHHCCCCCC
GGIEDVADGDGLLIGPEGGFSDVEVNMLRARPFVRMISLGGLILRADTAVACGLSLMGAG
CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHH
LRRVSGAGSR
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]