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The map label for this gene is ihfB

Identifier: 162148929

GI number: 162148929

Start: 3247667

End: 3247963

Strand: Reverse

Name: ihfB

Synonym: GDI_3159

Alternate gene names: 162148929

Gene position: 3247963-3247667 (Counterclockwise)

Preceding gene: 162148930

Following gene: 162148928

Centisome position: 82.35

GC content: 64.98

Gene sequence:

>297_bases
ATGACCAAATCGGAGCTGATCGCCGAACTGGCTGCGGCGAATCCGCACCTTCTCAGCCGCGACGTGGAATTGATCGTCCA
GACGATCTTCAGCGAGATCAGCGCGGCGCTGGCCCGGGGGGACCGTGTGGAACTGCGCGGCTTCGGGGCCTTCACGGTCA
AGAAGCGTGACGCCCGCACCGGACGCAATCCCCGCACCGGTGAAATGGTGGCGGTGGATGAAAAGGTCGTCCCCTTCTTC
AAGGCCGGCAAGGAACTGCGCGAGCGCGTGAACAACGGCGCCCCCGCCGAGGACTGA

Upstream 100 bases:

>100_bases
TTCGGTGACGAGTGGGCAGGAAGCGTGCTTTCGCAAGGCGTTGCGCTTGACGGGGCTGTTGCGATCTGGAAACCTTGAAC
ACGATCTCGGGAGGGGAAGG

Downstream 100 bases:

>100_bases
GGGAACGAAGGACGGTCATTCCTTCGTGTTCCGGTTCGTCCTGCCGAATGTTCTTGATATGTTCCAATTGCTGCTGCTAC
GGGTTCTTCTCTATGGAAGA

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta

Number of amino acids: Translated: 98; Mature: 97

Protein sequence:

>98_residues
MTKSELIAELAAANPHLLSRDVELIVQTIFSEISAALARGDRVELRGFGAFTVKKRDARTGRNPRTGEMVAVDEKVVPFF
KAGKELRERVNNGAPAED

Sequences:

>Translated_98_residues
MTKSELIAELAAANPHLLSRDVELIVQTIFSEISAALARGDRVELRGFGAFTVKKRDARTGRNPRTGEMVAVDEKVVPFF
KAGKELRERVNNGAPAED
>Mature_97_residues
TKSELIAELAAANPHLLSRDVELIVQTIFSEISAALARGDRVELRGFGAFTVKKRDARTGRNPRTGEMVAVDEKVVPFFK
AGKELRERVNNGAPAED

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=49.4505494505495, Blast_Score=98, Evalue=8e-23,
Organism=Escherichia coli, GI1788005, Length=98, Percent_Identity=36.734693877551, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=41.7582417582418, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=36.6666666666667, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFB_GLUDA (A9H0B5)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001603390.1
- RefSeq:   YP_002277544.1
- ProteinModelPortal:   A9H0B5
- SMR:   A9H0B5
- GeneID:   5790575
- GeneID:   6976639
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_3199
- HOGENOM:   HBG705085
- OMA:   PEKYVPH
- ProtClustDB:   PRK00199
- GO:   GO:0005694
- GO:   GO:0006350
- HAMAP:   MF_00381
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00988

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 10751; Mature: 10620

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELIAELAAANPHLLSRDVELIVQTIFSEISAALARGDRVELRGFGAFTVKKRDART
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCC
GRNPRTGEMVAVDEKVVPFFKAGKELRERVNNGAPAED
CCCCCCCCEEEECCHHHHHHHCCHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TKSELIAELAAANPHLLSRDVELIVQTIFSEISAALARGDRVELRGFGAFTVKKRDART
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCC
GRNPRTGEMVAVDEKVVPFFKAGKELRERVNNGAPAED
CCCCCCCCEEEECCHHHHHHHCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA