Click here to switch to the map view.

The map label for this gene is rimM

Identifier: 162148861

GI number: 162148861

Start: 3185285

End: 3185851

Strand: Reverse

Name: rimM

Synonym: GDI_3090

Alternate gene names: 162148861

Gene position: 3185851-3185285 (Counterclockwise)

Preceding gene: 162148862

Following gene: 162148860

Centisome position: 80.77

GC content: 70.72

Gene sequence:

>567_bases
GTGGATCGCGAGCGTATCCTGATGGGTGTGGTGGGACGTCCGCATGGCGTGCGGGGGCTGGTGCGCGTGCACAGCTACGC
CGCCGTGCCGGAGGACCTGACCGCCTATGGGGCGCTGACCGACGAGCACGGACAGGTCTGGAGCCTGCGCTGGCGGGGTG
ACGGCATTGCCGAGCTGCGCGACGCGGCGGGGCAGCCCCTGTCGGGCCGCGACGCCGCGCAGGCAATGGTCAACCGGCGC
CTCTATGTCGCGCGGACCAGCCTGCCGGAGCCCGATCAGGACGAATTCTACTTCACCGACCTGATCGGCATGGATGTCCG
CGCCCAGGGCACCGACGCGCCGCTGGGCCGCGTGCTGGTCGTCCATGATTACGGCGCGGGGGTCAGCCTGGAACTCGGTG
GCCAGGGGCATGCACCCCTGATCCTGCCGTTCACCCGGGCGTGCTTTCCGGTGGTCGACGTCGCCGCCGGCCGGATCGAG
GCGGTCCTGCCGGACGAGATCGAGGTGCAGGGCGACCTGTCCGACAAGGGCGAGGTCGAGGTTTCGGCAACCGGGGGTGC
GTCATGA

Upstream 100 bases:

>100_bases
AAGTCGGCGCCGAAGAAGCGCGCGCAGGAGCGTGCGGCCGCCGCCGCCGCTGCCGCGGCCTGATTCGGACGCGCGGACAG
GATCACAGGCAGGCTGAACG

Downstream 100 bases:

>100_bases
CCTGGCGGGCCACCGTGCTGACCCTGTTCCCCGACATGTTCCCCGGCCCGCTGGGCCAGTCGCTGGCCGGCCGTGCGCTG
GAAGGCGGCCTGTGGTCGGT

Product: 16S rRNA-processing protein rimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MDRERILMGVVGRPHGVRGLVRVHSYAAVPEDLTAYGALTDEHGQVWSLRWRGDGIAELRDAAGQPLSGRDAAQAMVNRR
LYVARTSLPEPDQDEFYFTDLIGMDVRAQGTDAPLGRVLVVHDYGAGVSLELGGQGHAPLILPFTRACFPVVDVAAGRIE
AVLPDEIEVQGDLSDKGEVEVSATGGAS

Sequences:

>Translated_188_residues
MDRERILMGVVGRPHGVRGLVRVHSYAAVPEDLTAYGALTDEHGQVWSLRWRGDGIAELRDAAGQPLSGRDAAQAMVNRR
LYVARTSLPEPDQDEFYFTDLIGMDVRAQGTDAPLGRVLVVHDYGAGVSLELGGQGHAPLILPFTRACFPVVDVAAGRIE
AVLPDEIEVQGDLSDKGEVEVSATGGAS
>Mature_188_residues
MDRERILMGVVGRPHGVRGLVRVHSYAAVPEDLTAYGALTDEHGQVWSLRWRGDGIAELRDAAGQPLSGRDAAQAMVNRR
LYVARTSLPEPDQDEFYFTDLIGMDVRAQGTDAPLGRVLVVHDYGAGVSLELGGQGHAPLILPFTRACFPVVDVAAGRIE
AVLPDEIEVQGDLSDKGEVEVSATGGAS

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_GLUDA (A9HS64)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001603322.1
- RefSeq:   YP_002277619.1
- ProteinModelPortal:   A9HS64
- SMR:   A9HS64
- GeneID:   5791919
- GeneID:   6976716
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_3277
- HOGENOM:   HBG703775
- OMA:   DRERILM
- ProtClustDB:   CLSK958128
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20116; Mature: 20116

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRERILMGVVGRPHGVRGLVRVHSYAAVPEDLTAYGALTDEHGQVWSLRWRGDGIAELR
CCCCEEEEEECCCCCCCHHHEEEHHHHCCCCCHHHCCCEECCCCCEEEEEECCCCHHHHH
DAAGQPLSGRDAAQAMVNRRLYVARTSLPEPDQDEFYFTDLIGMDVRAQGTDAPLGRVLV
HHCCCCCCCCHHHHHHHHCEEEEEECCCCCCCCCCEEEEEEECCCEEECCCCCCCCEEEE
VHDYGAGVSLELGGQGHAPLILPFTRACFPVVDVAAGRIEAVLPDEIEVQGDLSDKGEVE
EEECCCCEEEEECCCCCCCEEEEHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCEE
VSATGGAS
EEECCCCC
>Mature Secondary Structure
MDRERILMGVVGRPHGVRGLVRVHSYAAVPEDLTAYGALTDEHGQVWSLRWRGDGIAELR
CCCCEEEEEECCCCCCCHHHEEEHHHHCCCCCHHHCCCEECCCCCEEEEEECCCCHHHHH
DAAGQPLSGRDAAQAMVNRRLYVARTSLPEPDQDEFYFTDLIGMDVRAQGTDAPLGRVLV
HHCCCCCCCCHHHHHHHHCEEEEEECCCCCCCCCCEEEEEEECCCEEECCCCCCCCEEEE
VHDYGAGVSLELGGQGHAPLILPFTRACFPVVDVAAGRIEAVLPDEIEVQGDLSDKGEVE
EEECCCCEEEEECCCCCCCEEEEHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCEE
VSATGGAS
EEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA