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The map label for this gene is nifU [H]

Identifier: 162148826

GI number: 162148826

Start: 3148540

End: 3148965

Strand: Reverse

Name: nifU [H]

Synonym: GDI_3055

Alternate gene names: 162148826

Gene position: 3148965-3148540 (Counterclockwise)

Preceding gene: 162148827

Following gene: 162148825

Centisome position: 79.84

GC content: 71.36

Gene sequence:

>426_bases
ATGGACCAGGACGGGCTCTACCAGCGGCAGGTGATCGAGCGGGCCCGCGCGCCCGTTCATGCCGGCCCGCTGGACGGGGC
GACCCATCAGGGCGAGGGCACGAATCCGATGTGCGGCGACCGGGTGCGGCTGGGTGTGACGCTGGACGCGGCGGGCCGGG
TCGTGATGGTCCGGCATCAGACACGGGGATGCGCCATCTGCGTCGCCTCGGCCGATATGATGGCCGACCTGGCGCCGGGG
CGCAGCGTCGCGGAACTGGGGGTTCTGTCCCGCGCCTTCACCGACATGCTGCGGACCGGGGGCGACGCGCCGAACCCCGA
ACTGGCGACTTTCGCCGGCCTGCACCGGCACCGCTCGCGAATCCGCTGCGCCACATTGCCGTGGTCGGCGCTGGATGACG
CGTTGAACGAGTCGAAGGAGGGATGA

Upstream 100 bases:

>100_bases
GCTTCGGCCTCTATACGACGCGCGAGGAGGTGGACGCTCTGGCCAGGACGCTGGAGCAGATCCGCTCCTTCTTCCTGTAA
GGCGCGGGGGGAAGAGGACG

Downstream 100 bases:

>100_bases
GGCGGATGAACGCACAACCCGAGAAGACGGAAGCGATGGACGAACCCGCGACCAGACCGGCGGAAGAGGCATTTTCGTTC
GCTCCCCCCGCGACGGCCGA

Product: nitrogen fixation protein nifU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MDQDGLYQRQVIERARAPVHAGPLDGATHQGEGTNPMCGDRVRLGVTLDAAGRVVMVRHQTRGCAICVASADMMADLAPG
RSVAELGVLSRAFTDMLRTGGDAPNPELATFAGLHRHRSRIRCATLPWSALDDALNESKEG

Sequences:

>Translated_141_residues
MDQDGLYQRQVIERARAPVHAGPLDGATHQGEGTNPMCGDRVRLGVTLDAAGRVVMVRHQTRGCAICVASADMMADLAPG
RSVAELGVLSRAFTDMLRTGGDAPNPELATFAGLHRHRSRIRCATLPWSALDDALNESKEG
>Mature_141_residues
MDQDGLYQRQVIERARAPVHAGPLDGATHQGEGTNPMCGDRVRLGVTLDAAGRVVMVRHQTRGCAICVASADMMADLAPG
RSVAELGVLSRAFTDMLRTGGDAPNPELATFAGLHRHRSRIRCATLPWSALDDALNESKEG

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 15061; Mature: 15061

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQDGLYQRQVIERARAPVHAGPLDGATHQGEGTNPMCGDRVRLGVTLDAAGRVVMVRHQ
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEC
TRGCAICVASADMMADLAPGRSVAELGVLSRAFTDMLRTGGDAPNPELATFAGLHRHRSR
CCCEEEEEECHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
IRCATLPWSALDDALNESKEG
CEEECCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MDQDGLYQRQVIERARAPVHAGPLDGATHQGEGTNPMCGDRVRLGVTLDAAGRVVMVRHQ
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEC
TRGCAICVASADMMADLAPGRSVAELGVLSRAFTDMLRTGGDAPNPELATFAGLHRHRSR
CCCEEEEEECHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
IRCATLPWSALDDALNESKEG
CEEECCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]