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The map label for this gene is recO

Identifier: 162148788

GI number: 162148788

Start: 3105730

End: 3106494

Strand: Reverse

Name: recO

Synonym: GDI_3017

Alternate gene names: 162148788

Gene position: 3106494-3105730 (Counterclockwise)

Preceding gene: 162148789

Following gene: 162148787

Centisome position: 78.76

GC content: 73.07

Gene sequence:

>765_bases
ATGGAATGGGAGGCACCCGCCCTTGTGCTGTCTGCGTCCCCCTATGGCGAAAGCAGCGCCATCGTCCATCTGCTGACCGA
GGATCTCGGCCTGGTCCACGGCCTGGCCCGTGGGGGCACCGCCCGCGCCAACCGCGCGCTGTGGCAGCCCGGTAACCTGA
TCCGCGCCTCCTGGCGGGGGCGCCTGCCGGACCAGTTGGGCAATCTGTCCGGCGAACTGGTCCATGGGTCCGCCGCGCGG
CTGATGTCCGCGCCGCTGGCCCTGGCGATGCTGGCCTCGGCCTGCGCGGTGGCCGACGGCACCCTGCCCGAGCGCGAACC
CCATCCCCGTATCTTCCACCTGCTGACCCGCTTCTTCAGCCTGCTCAGCCTCGACCCCGACATGGCCGGGTGGGGCGGCA
TGGCGGCCCTGCTGCGGTGGGAGGCCTGCCTGCTCGGCGACCTGGGCTATGGCATGGACCTGTCGGCATGCGCGGTGACG
GGGGGCAGCGCGGAACTGGCCTGGGTCTCGCCCCGGACCGGGCGCGCGGTCAGCGACGCGGCGGCGGGGGAATGGCGGCC
GCGCCTGCTGCGCCTGCCGCCGCTGTTCCTGGACGAATCCGATCCCGGCACCGTCCAGGACTGGCGGGACGGGCTGCGCC
TGACCGGGCATTTCCTGGCCCGTGACGCCTTCGGCCAGCGCCATCGCCCGCTGCCGCCCGCGCGGTTGCGGCTGGTGGAT
ATGATCGATGCCCTTCAGCCCGGCGCCCTCCACCCCGACGATTGA

Upstream 100 bases:

>100_bases
AAGGAAGAGAACGACTTCGCGGCCGAGGTCGCCAAGGCGGCCGGCGTCTGACCGGCACGCGACCCTCTGATCGCAGCCTG
AACGGGGCGGGGCCTTCCTG

Downstream 100 bases:

>100_bases
GGCACGCACGCGATGGACAAATCGCGGATTTTCTCTATCTGTTCCCGGGACAGGAGGAGTGCGCATGTCAGTGGATACCA
GCGGCCATATCGAGGAAACC

Product: DNA repair protein recO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MEWEAPALVLSASPYGESSAIVHLLTEDLGLVHGLARGGTARANRALWQPGNLIRASWRGRLPDQLGNLSGELVHGSAAR
LMSAPLALAMLASACAVADGTLPEREPHPRIFHLLTRFFSLLSLDPDMAGWGGMAALLRWEACLLGDLGYGMDLSACAVT
GGSAELAWVSPRTGRAVSDAAAGEWRPRLLRLPPLFLDESDPGTVQDWRDGLRLTGHFLARDAFGQRHRPLPPARLRLVD
MIDALQPGALHPDD

Sequences:

>Translated_254_residues
MEWEAPALVLSASPYGESSAIVHLLTEDLGLVHGLARGGTARANRALWQPGNLIRASWRGRLPDQLGNLSGELVHGSAAR
LMSAPLALAMLASACAVADGTLPEREPHPRIFHLLTRFFSLLSLDPDMAGWGGMAALLRWEACLLGDLGYGMDLSACAVT
GGSAELAWVSPRTGRAVSDAAAGEWRPRLLRLPPLFLDESDPGTVQDWRDGLRLTGHFLARDAFGQRHRPLPPARLRLVD
MIDALQPGALHPDD
>Mature_254_residues
MEWEAPALVLSASPYGESSAIVHLLTEDLGLVHGLARGGTARANRALWQPGNLIRASWRGRLPDQLGNLSGELVHGSAAR
LMSAPLALAMLASACAVADGTLPEREPHPRIFHLLTRFFSLLSLDPDMAGWGGMAALLRWEACLLGDLGYGMDLSACAVT
GGSAELAWVSPRTGRAVSDAAAGEWRPRLLRLPPLFLDESDPGTVQDWRDGLRLTGHFLARDAFGQRHRPLPPARLRLVD
MIDALQPGALHPDD

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_GLUDA (A9HRQ4)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001603249.1
- RefSeq:   YP_002277691.1
- ProteinModelPortal:   A9HRQ4
- GeneID:   5791842
- GeneID:   6976792
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_3349
- HOGENOM:   HBG474229
- OMA:   PERDPHP
- ProtClustDB:   CLSK2541441
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 27323; Mature: 27323

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWEAPALVLSASPYGESSAIVHLLTEDLGLVHGLARGGTARANRALWQPGNLIRASWRG
CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCEEEECCCC
RLPDQLGNLSGELVHGSAARLMSAPLALAMLASACAVADGTLPEREPHPRIFHLLTRFFS
CCCHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
LLSLDPDMAGWGGMAALLRWEACLLGDLGYGMDLSACAVTGGSAELAWVSPRTGRAVSDA
HHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCEEEEECCCCCCCHHHH
AAGEWRPRLLRLPPLFLDESDPGTVQDWRDGLRLTGHFLARDAFGQRHRPLPPARLRLVD
CCCCCCCCEEECCCEEECCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
MIDALQPGALHPDD
HHHHCCCCCCCCCC
>Mature Secondary Structure
MEWEAPALVLSASPYGESSAIVHLLTEDLGLVHGLARGGTARANRALWQPGNLIRASWRG
CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCEEEECCCC
RLPDQLGNLSGELVHGSAARLMSAPLALAMLASACAVADGTLPEREPHPRIFHLLTRFFS
CCCHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
LLSLDPDMAGWGGMAALLRWEACLLGDLGYGMDLSACAVTGGSAELAWVSPRTGRAVSDA
HHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCEEEEECCCCCCCHHHH
AAGEWRPRLLRLPPLFLDESDPGTVQDWRDGLRLTGHFLARDAFGQRHRPLPPARLRLVD
CCCCCCCCEEECCCEEECCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
MIDALQPGALHPDD
HHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA