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The map label for this gene is 162148752

Identifier: 162148752

GI number: 162148752

Start: 3069148

End: 3069612

Strand: Direct

Name: 162148752

Synonym: GDI_2980

Alternate gene names: NA

Gene position: 3069148-3069612 (Clockwise)

Preceding gene: 162148746

Following gene: 162148754

Centisome position: 77.81

GC content: 70.75

Gene sequence:

>465_bases
ATGCCCCTGTTCAACATGCACCAGATCCGCGGCCAGCTTGGCCGCGACCAACGGCTGCTGGGACTCGATCCCGGCCAGAA
GACGATCGGCCTGGCGCTGTCGGACGTGTCGCTGATGCTGGCCTCGCCCTACGGCGCATTGCGGCGGGGCAAGCTGTCGG
TGGTGGCGGCCGAGATCCGGCGCATCGCCGCGCGCGAAGGCGTGGGGGGGCTGGTGTCCGGCCTGCCGCTGTCCATGGAC
GGCAGTTTCGGCCCGGCGGCCCAGGCGGCGCGCGACTGGATGATCAGCCTGTCCGAGCAGGTCGGCCTGCCGGCGGCGAT
GTGGGACGAACGCCTGTCGTCCAGCGCCGTGAACCGCATGCTGATCCAGGATGCGGACATGACCCGGCAGCGCCGCGCCG
AACTGGTGGACAAGCTGGCCGCGTCCTACATGCTGCAGGGCGCGCTGGACGCCACGGCGGAATGA

Upstream 100 bases:

>100_bases
GGACGGTCGCGGGATCAAGCGACATGAAGCATAACTTTCCATCATGATCTGAGGGGAATATCCTGCCGGCAGGACACCGC
GCGGACCATAGACCCAGACC

Downstream 100 bases:

>100_bases
CCCCGCCACGATAACGCGGCGGCGGTTCGACATGGCATGATTTCAAAAGGAAATTCCGAAGGATGGTGGGCGCAACAGGG
ATTGAACCTGTGACCCCTAC

Product: Holliday junction resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MPLFNMHQIRGQLGRDQRLLGLDPGQKTIGLALSDVSLMLASPYGALRRGKLSVVAAEIRRIAAREGVGGLVSGLPLSMD
GSFGPAAQAARDWMISLSEQVGLPAAMWDERLSSSAVNRMLIQDADMTRQRRAELVDKLAASYMLQGALDATAE

Sequences:

>Translated_154_residues
MPLFNMHQIRGQLGRDQRLLGLDPGQKTIGLALSDVSLMLASPYGALRRGKLSVVAAEIRRIAAREGVGGLVSGLPLSMD
GSFGPAAQAARDWMISLSEQVGLPAAMWDERLSSSAVNRMLIQDADMTRQRRAELVDKLAASYMLQGALDATAE
>Mature_153_residues
PLFNMHQIRGQLGRDQRLLGLDPGQKTIGLALSDVSLMLASPYGALRRGKLSVVAAEIRRIAAREGVGGLVSGLPLSMDG
SFGPAAQAARDWMISLSEQVGLPAAMWDERLSSSAVNRMLIQDADMTRQRRAELVDKLAASYMLQGALDATAE

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_GLUDA (A9HRJ3)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001603213.1
- RefSeq:   YP_002277711.1
- ProteinModelPortal:   A9HRJ3
- SMR:   A9HRJ3
- GeneID:   5791803
- GeneID:   6976815
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_3370
- HOGENOM:   HBG607919
- OMA:   VEVILWD
- ProtClustDB:   CLSK936699
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16535; Mature: 16404

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLFNMHQIRGQLGRDQRLLGLDPGQKTIGLALSDVSLMLASPYGALRRGKLSVVAAEIR
CCCCHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHH
RIAAREGVGGLVSGLPLSMDGSFGPAAQAARDWMISLSEQVGLPAAMWDERLSSSAVNRM
HHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LIQDADMTRQRRAELVDKLAASYMLQGALDATAE
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PLFNMHQIRGQLGRDQRLLGLDPGQKTIGLALSDVSLMLASPYGALRRGKLSVVAAEIR
CCCHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHH
RIAAREGVGGLVSGLPLSMDGSFGPAAQAARDWMISLSEQVGLPAAMWDERLSSSAVNRM
HHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LIQDADMTRQRRAELVDKLAASYMLQGALDATAE
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA