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The map label for this gene is yqhC [H]

Identifier: 162148523

GI number: 162148523

Start: 2839014

End: 2839934

Strand: Reverse

Name: yqhC [H]

Synonym: GDI_2746

Alternate gene names: 162148523

Gene position: 2839934-2839014 (Counterclockwise)

Preceding gene: 162148525

Following gene: 162148522

Centisome position: 72.0

GC content: 65.91

Gene sequence:

>921_bases
ATGTCCGCGATCGACCACCTGCGCGATCTTATCGGGCGCCATGCAGCCGGGCGACGCACACCGACCGCCGTGCCCGGCCT
CATGCTGTTCCGCTCCGAAGGTCGGTCGGTGCCGCTGAACTGCATCTATCGCTCCCGGCTCTATCTAATCGTTCAGGGCC
GCAAGCGGGTCGAGCTTGGAACGCATGCCTTCACCTATGACGACAGCCATTACCTGATCACCACGGTCGATCTGCCGGTC
AGCAGCGCGGTGATCGAGGCCAGTCCGCACCAGCCCTATCTGGCGCTCAGCATCGATTTCGATCCGGCGGTGCTGGCGGA
CCTGCTGCTGTCCGTGCCCGTCGGCGGGGACAGAGGGGCAGGGGATGAAGCCGGTCTGGCCGTCGCATCGCTGGATGAGG
CGTTGCTGGATTCCGTCCGCCGTCTTGTCGCACTGCTGGATACGCCAGGCGATATAGCGGTTCTTGCCCCGCTGGTGCGG
CAGGAAATCTATTATCGCCTGCTAACCGGCCCGCTCGGCGTTCGGCTTCGGGCGATCGCGGTGGCGGACAGCCACCTGAC
CCGGATTGCCCGGGTCATGGCCTGGATGCGGACGCATTATGCCGAGGAGTTTGGGATCGACGATCTGGCGCGCCTCGCCG
GTATGAGCGCGCCTTCGCTGTTTCGGCATTTCAAGGCGGTGGCGCTGATGAGCCCGATGCAGTACCGGACCTGCATCCGG
CTGCAGGAGGCCCGGCGGCGTCTGGTGGCGGACGGGGATGACGCGGCGGAGGCCGGTTTCGCCGTCGGGTATGACAGCCC
TTCCCAGTTTAGCCGGGATTACCGGCGCATGTTCGGGGTGCCCCCGGCCCGTGATGCCGCCCGGCTGCGGGGGGACTCTA
TGCTCATTGCGCAGGAGGTCGAGGAAGAACGCCTTTCCTGA

Upstream 100 bases:

>100_bases
AGGAAGATCCCATCGCGTTCTTGCATGATGCTATCAGAAGTAGACACCGCGCCTTGTGCGCCGTCATCCACAAGAGCAGT
TTCATGGCGGAGGATCATGA

Downstream 100 bases:

>100_bases
ACGTGTCTGTCGGGCTTCGTCTGCCGGTTTCGATAAACCGTCAGGAGCAAGTAAAACCCGCATCCGTTACGATCTTGTAC
GATCGTGAGAAAAGGCTGTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MSAIDHLRDLIGRHAAGRRTPTAVPGLMLFRSEGRSVPLNCIYRSRLYLIVQGRKRVELGTHAFTYDDSHYLITTVDLPV
SSAVIEASPHQPYLALSIDFDPAVLADLLLSVPVGGDRGAGDEAGLAVASLDEALLDSVRRLVALLDTPGDIAVLAPLVR
QEIYYRLLTGPLGVRLRAIAVADSHLTRIARVMAWMRTHYAEEFGIDDLARLAGMSAPSLFRHFKAVALMSPMQYRTCIR
LQEARRRLVADGDDAAEAGFAVGYDSPSQFSRDYRRMFGVPPARDAARLRGDSMLIAQEVEEERLS

Sequences:

>Translated_306_residues
MSAIDHLRDLIGRHAAGRRTPTAVPGLMLFRSEGRSVPLNCIYRSRLYLIVQGRKRVELGTHAFTYDDSHYLITTVDLPV
SSAVIEASPHQPYLALSIDFDPAVLADLLLSVPVGGDRGAGDEAGLAVASLDEALLDSVRRLVALLDTPGDIAVLAPLVR
QEIYYRLLTGPLGVRLRAIAVADSHLTRIARVMAWMRTHYAEEFGIDDLARLAGMSAPSLFRHFKAVALMSPMQYRTCIR
LQEARRRLVADGDDAAEAGFAVGYDSPSQFSRDYRRMFGVPPARDAARLRGDSMLIAQEVEEERLS
>Mature_305_residues
SAIDHLRDLIGRHAAGRRTPTAVPGLMLFRSEGRSVPLNCIYRSRLYLIVQGRKRVELGTHAFTYDDSHYLITTVDLPVS
SAVIEASPHQPYLALSIDFDPAVLADLLLSVPVGGDRGAGDEAGLAVASLDEALLDSVRRLVALLDTPGDIAVLAPLVRQ
EIYYRLLTGPLGVRLRAIAVADSHLTRIARVMAWMRTHYAEEFGIDDLARLAGMSAPSLFRHFKAVALMSPMQYRTCIRL
QEARRRLVADGDDAAEAGFAVGYDSPSQFSRDYRRMFGVPPARDAARLRGDSMLIAQEVEEERLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=253, Percent_Identity=33.9920948616601, Blast_Score=148, Evalue=6e-37,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33698; Mature: 33567

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAIDHLRDLIGRHAAGRRTPTAVPGLMLFRSEGRSVPLNCIYRSRLYLIVQGRKRVELG
CCHHHHHHHHHHHHCCCCCCCCCCCHHEEECCCCCCCCHHEEEECEEEEEEECCCEEEEC
THAFTYDDSHYLITTVDLPVSSAVIEASPHQPYLALSIDFDPAVLADLLLSVPVGGDRGA
CEEEEECCCCEEEEEECCCCCCCEEECCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCC
GDEAGLAVASLDEALLDSVRRLVALLDTPGDIAVLAPLVRQEIYYRLLTGPLGVRLRAIA
CCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
VADSHLTRIARVMAWMRTHYAEEFGIDDLARLAGMSAPSLFRHFKAVALMSPMQYRTCIR
EHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHH
LQEARRRLVADGDDAAEAGFAVGYDSPSQFSRDYRRMFGVPPARDAARLRGDSMLIAQEV
HHHHHHHHCCCCCCHHHCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHH
EEERLS
HHHHCC
>Mature Secondary Structure 
SAIDHLRDLIGRHAAGRRTPTAVPGLMLFRSEGRSVPLNCIYRSRLYLIVQGRKRVELG
CHHHHHHHHHHHHCCCCCCCCCCCHHEEECCCCCCCCHHEEEECEEEEEEECCCEEEEC
THAFTYDDSHYLITTVDLPVSSAVIEASPHQPYLALSIDFDPAVLADLLLSVPVGGDRGA
CEEEEECCCCEEEEEECCCCCCCEEECCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCC
GDEAGLAVASLDEALLDSVRRLVALLDTPGDIAVLAPLVRQEIYYRLLTGPLGVRLRAIA
CCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
VADSHLTRIARVMAWMRTHYAEEFGIDDLARLAGMSAPSLFRHFKAVALMSPMQYRTCIR
EHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHH
LQEARRRLVADGDDAAEAGFAVGYDSPSQFSRDYRRMFGVPPARDAARLRGDSMLIAQEV
HHHHHHHHCCCCCCHHHCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHH
EEERLS
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]