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The map label for this gene is ycaN [H]

Identifier: 162148506

GI number: 162148506

Start: 2822523

End: 2823464

Strand: Direct

Name: ycaN [H]

Synonym: GDI_2728

Alternate gene names: 162148506

Gene position: 2822523-2823464 (Clockwise)

Preceding gene: 162148501

Following gene: 162148507

Centisome position: 71.56

GC content: 60.83

Gene sequence:

>942_bases
ATGGCTATCGATACAAGGCTATTGAGCGGTATCGAGACGCTGATCGCGGTGGCGGAGACCGGTGGTTTCACCCGTGCAGC
CGCAACAATGGGCCTGACGCCATCGGGTGTCAGCCGAGCCGTCGCGCGCCTGGAATCCCGCCTCGGCGTCCGGCTGTTCG
ACCGCAATGCCCGCTCAACGACATTGACGGAGGCCGGGCATCGACTGGTGGCCGAGGTTGCGCCCCTGCTCGCCGGGATC
GAGGAGGCAACAAGCAGCGCAGCCGGTGCGTCGGCGACAGTTTCCGGGCGGCTGCGCGTCAATTGTGATCCATGGTTCGC
CAGTCTGCTACTCGCACCAAAGCTTCGATCATTTCTCGACGCCCATCCTGCACTGACACTGGATTTGGTGACACGCGACA
CTCTGGGCGATCTCGTCTCCGAAGGGTTCGATGTCGCGATCCGCTTCGGCGAGCCACTGCCCTCCGGTCTGATCACACGC
AAATTGCTGGAAGCGCGGATCGTGACCTGCGCGTCTCCCGCCTATATCGCGCGTCACGGTCGTCCCATCCATCCGCGAGA
TCTGGAAACAGGCACGCATGAGTGTCTGCTGTTCCGGGATCCGGCGACCGGACGTCCCTTCGACTGGGAATTCCACCGAC
AGGGCGAAATCCTGAATATCTCGGTGCGCGGACGCCTGATCCTGAACGATGTCGCAACCGGCCTGGCCGCGTGTATCGCA
GGCCTGGGCGTAGCGCAGCCCATGACACTCGGAATCGACGAGCTTCTGCGAAGCGGCACCCTGATCGACCTTTTTCCGGA
CTGGTGCGATGAATATTTCCCGCTCCATGTCTATCATCCGTCGCGCCATCTTCCGCCCGCAAAAGTTCGGGCGTTTCTGG
ATTTCATTTGTAATGATGTCGCGACCGTCCAAATAAAGCACGATGGATTTATCGGTCTGTAA

Upstream 100 bases:

>100_bases
TCCGGGCGGCAGAAGCACCGCCTGTGCGACGCATATGCCTGCTGGACATCTCATGATTCGAGCGCAATTCTGTCATTCCA
ATGATGACGGGAAATCAACT

Downstream 100 bases:

>100_bases
GGGAGGACATTATGCGTCGACGTCTGCCCCTGACGGCTATGGAAGCGTTCTGCGCGGTCGCGCGGCATCTCAGCTTTCGC
GGCGCCGCTGGGTCTATTGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MAIDTRLLSGIETLIAVAETGGFTRAAATMGLTPSGVSRAVARLESRLGVRLFDRNARSTTLTEAGHRLVAEVAPLLAGI
EEATSSAAGASATVSGRLRVNCDPWFASLLLAPKLRSFLDAHPALTLDLVTRDTLGDLVSEGFDVAIRFGEPLPSGLITR
KLLEARIVTCASPAYIARHGRPIHPRDLETGTHECLLFRDPATGRPFDWEFHRQGEILNISVRGRLILNDVATGLAACIA
GLGVAQPMTLGIDELLRSGTLIDLFPDWCDEYFPLHVYHPSRHLPPAKVRAFLDFICNDVATVQIKHDGFIGL

Sequences:

>Translated_313_residues
MAIDTRLLSGIETLIAVAETGGFTRAAATMGLTPSGVSRAVARLESRLGVRLFDRNARSTTLTEAGHRLVAEVAPLLAGI
EEATSSAAGASATVSGRLRVNCDPWFASLLLAPKLRSFLDAHPALTLDLVTRDTLGDLVSEGFDVAIRFGEPLPSGLITR
KLLEARIVTCASPAYIARHGRPIHPRDLETGTHECLLFRDPATGRPFDWEFHRQGEILNISVRGRLILNDVATGLAACIA
GLGVAQPMTLGIDELLRSGTLIDLFPDWCDEYFPLHVYHPSRHLPPAKVRAFLDFICNDVATVQIKHDGFIGL
>Mature_312_residues
AIDTRLLSGIETLIAVAETGGFTRAAATMGLTPSGVSRAVARLESRLGVRLFDRNARSTTLTEAGHRLVAEVAPLLAGIE
EATSSAAGASATVSGRLRVNCDPWFASLLLAPKLRSFLDAHPALTLDLVTRDTLGDLVSEGFDVAIRFGEPLPSGLITRK
LLEARIVTCASPAYIARHGRPIHPRDLETGTHECLLFRDPATGRPFDWEFHRQGEILNISVRGRLILNDVATGLAACIAG
LGVAQPMTLGIDELLRSGTLIDLFPDWCDEYFPLHVYHPSRHLPPAKVRAFLDFICNDVATVQIKHDGFIGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=33.7931034482759, Blast_Score=174, Evalue=7e-45,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=31.6151202749141, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=33.6734693877551, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787589, Length=288, Percent_Identity=28.8194444444444, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=31.740614334471, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=30.1694915254237, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=24.8275862068966, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789173, Length=300, Percent_Identity=29.6666666666667, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786448, Length=248, Percent_Identity=28.6290322580645, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788706, Length=312, Percent_Identity=25.3205128205128, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1790011, Length=302, Percent_Identity=22.8476821192053, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI157672245, Length=143, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790208, Length=172, Percent_Identity=33.1395348837209, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI145693105, Length=127, Percent_Identity=26.7716535433071, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33830; Mature: 33699

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDTRLLSGIETLIAVAETGGFTRAAATMGLTPSGVSRAVARLESRLGVRLFDRNARST
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCCC
TLTEAGHRLVAEVAPLLAGIEEATSSAAGASATVSGRLRVNCDPWFASLLLAPKLRSFLD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECEEEEECCHHHHHHHHHHHHHHHHH
AHPALTLDLVTRDTLGDLVSEGFDVAIRFGEPLPSGLITRKLLEARIVTCASPAYIARHG
CCCCEEEEEHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCC
RPIHPRDLETGTHECLLFRDPATGRPFDWEFHRQGEILNISVRGRLILNDVATGLAACIA
CCCCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCEEEHHHHHHHHHHHHH
GLGVAQPMTLGIDELLRSGTLIDLFPDWCDEYFPLHVYHPSRHLPPAKVRAFLDFICNDV
HCCCCCCHHCCHHHHHHCCCEEEECHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCE
ATVQIKHDGFIGL
EEEEEECCCCCCC
>Mature Secondary Structure 
AIDTRLLSGIETLIAVAETGGFTRAAATMGLTPSGVSRAVARLESRLGVRLFDRNARST
CCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCCC
TLTEAGHRLVAEVAPLLAGIEEATSSAAGASATVSGRLRVNCDPWFASLLLAPKLRSFLD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECEEEEECCHHHHHHHHHHHHHHHHH
AHPALTLDLVTRDTLGDLVSEGFDVAIRFGEPLPSGLITRKLLEARIVTCASPAYIARHG
CCCCEEEEEHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCC
RPIHPRDLETGTHECLLFRDPATGRPFDWEFHRQGEILNISVRGRLILNDVATGLAACIA
CCCCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCEEEHHHHHHHHHHHHH
GLGVAQPMTLGIDELLRSGTLIDLFPDWCDEYFPLHVYHPSRHLPPAKVRAFLDFICNDV
HCCCCCCHHCCHHHHHHCCCEEEECHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCE
ATVQIKHDGFIGL
EEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]